Gene detail

Gene detail information of Glyur000086s00011515.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45820.1	4.00E-151	CBL-interacting protein kinase 20
NR	XP_004485907.1	0	PREDICTED: CBL-interacting serine/threonine-protein kinase 20-like [Cicer arietinum]
COG	YP_823396.1	2.00E-36	serine/threonine protein kinase [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9LWM4\|CIPK5_ORYSJ	0	CBL-interacting protein kinase 5
trEMBL	tr\|I3SGC6\|I3SGC6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK39318.1}

Sequence

Transcript Sequence

>Glyur000086s00011515.1
ATGGAGAAGAAAGCAACAATCCTAATGCAAAAGTACGAGGTTGGACGCATACTTGGCCAGGGCAACTTCGCCAAGGTTTACCATGCAAGGAACCTAAAGACTGGCCAGAGTGTTGCCATCAAGGTGTTAAACAAAGAGATGATCATGAGGGACGGTTTGAAGGATCAAATAAAGCGTGAAATCTCTGTGATGCGCCTTATGAGGCACCCCAACATTGTGCAACTCTATGAGGTCATGGCAAGCAAAANAAAGATCTATTTTGCAATGGAGTACGTGAAAGGTGGTGAGCTTTTTCACAAAGTGTCCAGAGGGATGCTGAGGGAAGATGTGGCTAGAAAATATTTCCAACAGCTAATTGAGGCTGTTAATCACTGCCACAGAAGAGGGGTTTATCACCGTGACCTCAAACCTGAGAACCTTCTCCTTGATGAAAATGGGGACCTCAAAGTCACTGACTTTGGCCTAAGTGCATTGCTTGAATCCAAAAAGAGTGATGGCCTTCTTCACACAACTTGTGGTACCCCTGCTTATGTGGCACCTGAGGTGATCAAGAGGAAAGGGTATGATGGAGCCAAGGCTGATATTTGGTCTTGTGGGGTCATTCTCTATGTCCTCTTGGCTGGTTTTCTTCCTTTCAATGATAAAAATGTAATGGAGATGTATAGGAAGATTGCCAAGGCAGATTTCAAGTTCCCACAATGGTTCCATTCAGATGTGAAGAGGCTTCTCTTTAGAATCCTTGATCCCAATCCAAGGACAAGAATTAGTATTGACAAGATCATGCAGAGTACTTGGTTTAGAAAAGGGTATAATAAGCAGATTGAAGCACCCATGTTGCCAGCTTTATCCCCTACTGTTGGGGATATCTCTGATGTTCATGATGCTTTTGATTCATCAAGTTCAGAAGATGGAAGCCTACTATGTGATCATGACAAAGAAGAAAGCCCCATGAAGCCTTATTGTTTCAATGCATTTGATCTCATATCACTCTCTTCAGGGTTTGACCTCTCTGGCCTGTTTGAGACAGATAAGTGCGAGAGAAAGCATGAGAGATTCTCAACTAAGAAACCACCTTCCACAATTGTGTCAAAACTTGAAGAGATAGCACACATAGATGGTGGGTTTAAGTTCATGAAGAAAAATGGGTCTGTGAGATTGGAGGGAATCGAGNCAACAAAGCTAAAAAGACAACTCAGTATAGATGCAGAGATTTTTGAAGTTACGTCTTCCTTTTACATTGTGGAGGTGAANAAAATTGCTGGAGACACATTGGAATATAGGGAATTCCGGGACCAGTGCTTAAAGCCTCNTCTAAATGAAATAGTTTGGGCTTGGCAAGGATATGAGCAGCACCAATGTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	136214	137575	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011515.1	PF00069.20	Pkinase	12	266	2.00E-78
Glyur000086s00011515.1	PF03822.9	NAF	318	378	2.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.027
SRR1783600	control	0.027
SRR1783602	moderate drought stress	0.112
SRR1811619	moderate drought stress	0.111

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.200
DRR006520	Root Summer glycyrrhizin high producing strain	0.237
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.162
DRR006524	Root Summer glycyrrhizin low producing strain	0.088
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.410
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.365
SRR2868004	Drought Stress (root)	0.163
SRR2967015	Control (root)	0.152

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.379
SRR9715740	Leaf	0.348
SRR9715741	Leaf	0.193
SRR9715739	Root	0.097
SRR9715742	Root	0.023
SRR9715743	Root	0.090

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.261
SRR8749028	MeJA induced 9h	0.242
SRR8749029	MeJA induced 9h	0.134
SRR8749030	Uninduced	0.193
SRR8749031	Uninduced	0.113
SRR8749032	Uninduced	0.248

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.027
SRR8400027	Control - Root	0.010