Gene detail information of Glyur000086s00011514.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18700.1 | 0 | CBL-interacting protein kinase 12 |
| NR | AFK41470.1 | 0 | unknown [Lotus japonicus] |
| COG | YP_007468874.1 | 1.00E-37 | serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523] |
| Swissprot | tr|Q9SN43|CIPKC_ARATH | 0 | CBL-interacting serine/threonine-protein kinase 12 |
| trEMBL | tr|I3SMH8|I3SMH8_LOTJA | 0 | Uncharacterized protein {ECO:0000313|EMBL:AFK41470.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 128954 | 130504 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:4.2.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011514.1 | PF00069.20 | Pkinase | 32 | 286 | 5.60E-74 |
| Glyur000086s00011514.1 | PF03822.9 | NAF | 351 | 408 | 4.70E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.587 |
| SRR1783600 | control | 15.628 |
| SRR1783602 | moderate drought stress | 13.439 |
| SRR1811619 | moderate drought stress | 13.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.854 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 26.019 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.579 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.576 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 46.838 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.670 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.993 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 17.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 32.238 |
| SRR2868004 | Drought Stress (root) | 38.113 |
| SRR2967015 | Control (root) | 49.393 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 66.995 |
| SRR9715740 | Leaf | 63.509 |
| SRR9715741 | Leaf | 72.230 |
| SRR9715739 | Root | 61.356 |
| SRR9715742 | Root | 56.920 |
| SRR9715743 | Root | 62.377 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.540 |
| SRR8749028 | MeJA induced 9h | 9.443 |
| SRR8749029 | MeJA induced 9h | 6.694 |
| SRR8749030 | Uninduced | 7.781 |
| SRR8749031 | Uninduced | 7.745 |
| SRR8749032 | Uninduced | 12.056 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.014 |
| SRR8400027 | Control - Root | 36.129 |