Gene detail

Gene detail information of Glyur000086s00011513

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45800.1	3.00E-178	Leucine-rich repeat protein kinase family protein
NR	XP_004485908.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Cicer arietinum]
COG	YP_004163702.1	4.00E-16	hypothetical protein [Cellulophaga algicola DSM 14237]
Swissprot	tr\|C0LGK9\|Y2242_ARATH	1.00E-102	Probable LRR receptor-like serine/threonine-protein kinase At2g24230 (Precursor)
trEMBL	tr\|G7ZXK4\|G7ZXK4_MEDTR	0	LRR receptor-like serine/threonine-protein kinase GSO1 {ECO:0000313\|EMBL:AES83942.1}

Sequence

Transcript Sequence

>Glyur000086s00011513.1
CTCACAGCTTCCCCTAATTGCAAGTACCCTCATTACTCACTCCATTCCATATACAGCAGCATTGCCCCCAGTAAAATTCACAATTAAATCACNGTGGGCAATTATGTTACGGAAGAAATTTAATTAAACATTTGAAAACAAACAAAATACTATTCAAAACAAAAAAGTCGCATTGACTGCATCACTATTCAGCAAGTGGCGATCTCAAAGGCAAGTTGTTCATGATGTTCAACACTAGTCAACGCCCCATTGTACAACTTCCATTAAATTGTCCTTCACCATTCATAATAGTAACCATGCTCACGTGCCGTTAACTCCTCCGTCAAAAGACACATGACGCCGTTGCTTCCCACTTCACTATAACCGCGAACTATCCCACTATACTNCGCCAACAACAACAGACCAAAAACCTCTGTCCCTTTATTTCTTTCTTTCATTGCCTTCGTTCGGAAGGGGATATAATAGGAACTAGATTGAGAGACCGCGGAGCTAAGAAAAATGAAGCCCTTTTGCAGGTTGTTGATTCTCCTTGGGCTTGTTGCTCTAGTGGAATCATCATGCAACAATAGTGAAGAACAGGACATGGTGTCAAAGGCCTTCCAATCAGTCTCAGGATCCAACTCTTCTTCCTGGTTCCTCCAAAGAAGAGGTTTCAACTGTTCATCAAAGGGTCAGATTAGGTCGATAGAGCTTCCATCCAAAAACTTGAGCGGTAGCATCTCATGGAGGTATCTGAGGAACATGTCGGAGTTGGAGGTTCTCGATCTGTCTGGGAATTATCTGCAAGGCCAGGTTCCAAACTGGNTCTGGGCAAGCTCTAGCTTATTGGTAGTGAACCTGTCCAAGAACCGGTTCGGAGGGAGCATTGCTTTGAAACCGAAACCCAGTTTTCAAAACGGTTNCTTTTCGTCGCTGCAAAAACTGAATCTCTCACACAACAGATTCACCAACCTGGTTCAACTCTCTGGTTTCTCAAACCTGAAAAGTCTCGACCTTTCCCACAACAACCTGGGCACTCTCCCTTCCGGGTTCCAAAACCTCACCAAACTACAACACCTCGATCTCTCAAGCTGCAACATCAAAGGAAACGTGAAACCCATTTCTTCCCNATCCTCGCTCTCCTACTTGGACCTTTCAAACAACTCTTTGAACGGTAGTTTCCCTTCTGACTTCCCTCCCCTGAACGGCATCAAATTCTTCAACATCTCCCACAACGACTTCAAAGCATTAACCACCTTAGACAGGTTCAAGAAATTTGGAAAATCAGCATTCATTCACGCCGGCAACAACTTCAACTTCACCAAATACAACGCATCCAAAACGCCAAACCTCCATTCAAATCCAAATTCAAACTCAACCCCACCACCACACATGAAAAAGCCAATACCCATTCGCACCGAGGAGAAGAAACACAAACCCAAACCCAAACACAAGTCAAAACAACACAAAACCATGATAGTGGCAGTGTCCTCTGCTTCAGCGGTGGTCGTTGTCGTGTTGTGCGTGTGGGCATTGTTCTGCGGTTACAGAAAGAAGAGGGAATTGGCGAGAAGGAACAAATGGGCAATCTCGAAACCGGTGCAACCGACGGTGAAGATGGAGAAATCGGGGCCGTTCGCGTTTGAGACAGAGTCGGGGACATCTTGGGTGGCTGACCTGAAGGAACCAACCTCTGCACCCGTGGTGATGTTCGAGAAGCCACTCATGAACCTCACCTTCGTGGACCTCATGGCTGCCACGTCACACTTCGGGAAGGACTCCCAGCTCGCACAGGGTAGGTGTGGGCCCGTCTATCGAGCTGTCCTACCTGGTGACATCCACGTGGCAATCAAGGTGCTCGAGANCGCCAGAGACGTAGATCATGATGACGCTGTCTCCACCTTCCTTGACCTCTCACACCTCAAGCACCCCAACCTCTTGCCCCTCTCCGGTTACTGTATCGCAGGCAAGGAGAAGCTGGTGTTGTACGAGTTCATGTCAAANGGGGATTTGGGTAGATGGCTGCACGAGCTACCCACAGGGGAGACTAACGTGGAGGATTGGAGTAGTGACACGTGGGAGATTCAAAACGGCATCGGTTCACGAGCCTCATCCCCAGAAAAGATGGGGTGGCCAACACGACACCGTATCGCGGTGGGGGTAGCGCGTGGGTTGGCATTCCTCCACCACGCGGGGTCGAGACCCGTCGTGCACGGCCATCTGGTGACATCAAATGTGCTTCTCGCCGACGACTTCGAGCCCCGAATCGCCGATTTCGGGTTCCGAAAGATCGGGCAGCAACAAGGTCCCCCGAATTGCAGCACTGAAACGGATGTGTATTGCTTCGGGGTGGTGTTGATGGAGCTGCTGACGGGGAAGCCCGGCACGGCGGAGACGGTGGTTTGGGTGAGAAAATTGGTGAGGGAGGGACATGGGGTGAGGGCGCTCGACGATAGGCTCACACTCGGTGGCGGTGACTCAGAGAGTCAGATGGCGGAGAGCCTCCGAGTCGCCTACCTCTGCACGGCGGAGTCACCNGGCAAAAGGCCCACCATGCAGCAGGTTTTGGGTCTTCTCAAAGACATTCATCCAAGCGGCGGAATCGACTGAGTTGACTCTCCCCCTAACTCGCCCCTTTTTTTGTTTTTTGAGGCTTACATATTTAACCTCGATGGAGTTTTCGACCATTTTTCTTTTTCTTTTTTGTTTTCTTTTCAAATATTTATGATGATTATGATTGCAATGTATATACCAAAAAGTTTAGGAGNAAAAAGGGAAAAAGAAAAAGTGAAAAAGGTGGACAAAATGAAGTGGGGTAGGAAGGGAAGCGGGGAAGGCTTGGAAAGGGTGATCAATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	117936	121821	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011513.1	PF13855.1	LRR_8	61	119	3.00E-07
Glyur000086s00011513.1	PF13855.1	LRR_8	137	194	2.60E-11
Glyur000086s00011513.1	PF00560.28	LRR_1	206	226	0.079
Glyur000086s00011513.1	PF07714.12	Pkinase_Tyr	420	590	1.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.079
SRR1783600	control	4.025
SRR1783602	moderate drought stress	3.501
SRR1811619	moderate drought stress	3.594

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.521
DRR006520	Root Summer glycyrrhizin high producing strain	9.614
DRR006521	Root Winter glycyrrhizin high producing strain	4.871
DRR006522	Root Winter glycyrrhizin high producing strain	4.515
DRR006523	Root Summer glycyrrhizin low producing strain	16.473
DRR006524	Root Summer glycyrrhizin low producing strain	16.596
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.651
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.595

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.685
SRR2868004	Drought Stress (root)	9.933
SRR2967015	Control (root)	11.085

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.834
SRR9715740	Leaf	6.301
SRR9715741	Leaf	9.647
SRR9715739	Root	7.007
SRR9715742	Root	19.368
SRR9715743	Root	18.735

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.412
SRR8749028	MeJA induced 9h	23.179
SRR8749029	MeJA induced 9h	25.891
SRR8749030	Uninduced	7.014
SRR8749031	Uninduced	4.303
SRR8749032	Uninduced	10.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.180
SRR8400027	Control - Root	4.733