Gene detail

Gene detail information of Glyur000086s00011510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34190.1	0	Xanthine/uracil permease family protein
NR	XP_004973341.1	0	PREDICTED: nucleobase-ascorbate transporter 2-like isoform X1 [Setaria italica]
COG	YP_007285782.1	2.00E-60	xanthine/uracil permease [Halovivax ruber XH-70]
Swissprot	tr\|Q94C70\|NAT2_ARATH	0	Nucleobase-ascorbate transporter 2
trEMBL	tr\|V7AXL0\|V7AXL0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08971.1}

Sequence

Transcript Sequence

>Glyur000086s00011510.1
GTTACAAAGTGTGGCAGAGATCATGGCAACTCCAAAGCCAGAGGAGATAAGCCACCCACCAATGGACCAACTTCAAGGCTTAGAGTACTGTATAGATTCAAACCCATCCTGGGTGGAGTCAATAGCTCTGGGTTTCCAGCATTACATTTTGGCCTTAGGAACTGCAGTGATGATTCCTTCATTTCTTGTGCCTTTGATGGGTGGAAGTGATGATGATAAAGTGAGGGTGGTACAAACTCTGCTTTTTGTTGAAGGAATTAATACACTCCTTCAGACACTCTTTGGAACCCGGTTACCAACAGTGATGGGAGGGTCTTACGCATTCATGGTCCCCATTATATCCATCATTCATGATTCGTCATTGACCACCATAGAGGACCCACATTTGAGATTTCTTAACACCATGAGAGCANTCCAAGGTGCAATGATAGTAGCATCAAGCATACAAATTATTTTGGGCTTTAGTCAAATATGGGCCATTTGTTCTAGGTTTTTCAGCCCACTTGGAATGGTTCCAGTAATTGCATTAGCTGGTTTTGGGTTATTTGACCGAGGGTTCCCTGTGGTTGGGCATTGCGTTGAAATTGGAATTCCCATGTTAATTCTGTTTGTAGCCTTGTCTCAGTACTTGAAAAATTTTCATGCAAGACAGCTACCAATATTAGAGCGATTTGCTCTACTTATATCAACCACAGTGATATGGGCCTANGCACATCTCTTAACAGCAAGTGGAGCATACAAACACCGACCAGAATTAACCCAACATAACTGCAGAACAGACAGGGCCAACCTCATTTCATCTGCTCCATGGTTATCAACTGGGGCATACAAAGCTGCATCACGACTAGCAAGTGCAACACCACCTCCTGCTCATGTTCTGAGCCGTGGTATTGGCTGGCAGGGAATTGGAATCTTGTTGAATGGCCTTTTTGGAACACTGACTGGTTCAACAGTTTCTGTAGAGAATGTGGGGCTTCTGGGAAGCACACGTGTTGGAAGTCGAAGGGTCATTCAAATTTCAGCTGGTTTTATGATATTCTTCTCAATGTTAGGAAAATTTGGAGCTTTTTTTGCATCAATACCCTTACCCATTTTTGCTGCTGTGTACTGTGTCCTATTTGGCCTTGTGGCTTCTGTGGGGCTATCATTTTTGCAGTTCACTAACATGAACTCAATGAGGAACCTCTTTATTACTGGTGTTGCCCTTTTCTTGGGCCTTTCTATTCCTGAGTATTTTAGAGAATACACTGCCAAGGCCCTTCATGGTCCTACTCATACAAGGGCTGGATGGTTCAATGATTTCATCAATACTATCTTCTTCTCATCCCCAACTATTGCATTGATTATTGCTGTGTTCTTGGACAACACTCTTGATTACAAGGGTAGCGCCAAAGACAGGGGAATGCCATGGTGGGCCAAGTTTAGAACATTTGATGGAGATAGTAGGAATGAAGAGTTCTACACCCTCCCTTTCAACCTCAACCGGTTTTTCCCTCCATCTTAACTAAGGAAGTTATGTATCATGAAGAAAGATGTTAGAGGAAAAGTATCATTTTCCATAGAGGGTTATATATTTTGTTGGTATGAGAGGGAAGAAGAGTGATAACTATGTAAGTTTGAGATAGACTTCTTCATGGCCTTTTTTCTAAAAGAAAAATATTCAAGTCAAGATTATTTACTCCTTGTACAATTTTTTACACATGAAAATGATACTATAACCATAAATTATATCAATTNAACTCATTCTTTGGGGGAAAAAAGGATATTGACAATTTCAATATTTGTATAAAGGATCGTGACCGAAGAATATCATAATCATATGAAGCTGAAAAAGTGACAGGAAAAGAAACTAATGAAATTCAATCTCAAACAGTGTTATATATTAACAAGTGTTGAGGTTTGCTAATGCAAGGACTAGCTAGCTAATGTTGTTTGCACATGCACTCTGGGCACCTAGGATGTCTATAAATGCTTCGTCCATAACTCCTTATGCTATTGCCAGCCTTCTGAGCTTCCAGAATCATCTTCTTTACCCTGAATTCAAAACGGTTCCATCCTATGGTGCCATTCTCCGTCAAAATTGTAGCTAGCCTCGTCTTGTTAGGCCGCAAGGTAGGAGCGTGACNGCCACCATAGTAGGTTCTGAATCCAGACACCAATGATGAAAGTTGGCTACCAGAGTCAGTCATGGCAAATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	100668	105197	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011510.1	PF00860.15	Xan_ur_permease	33	405	4.80E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.148
SRR1783600	control	15.003
SRR1783602	moderate drought stress	6.976
SRR1811619	moderate drought stress	6.770

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.366
DRR006520	Root Summer glycyrrhizin high producing strain	4.651
DRR006521	Root Winter glycyrrhizin high producing strain	0.050
DRR006522	Root Winter glycyrrhizin high producing strain	0.049
DRR006523	Root Summer glycyrrhizin low producing strain	2.110
DRR006524	Root Summer glycyrrhizin low producing strain	2.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.296
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.421

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.633
SRR2868004	Drought Stress (root)	3.864
SRR2967015	Control (root)	4.186

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.134
SRR9715740	Leaf	0.084
SRR9715741	Leaf	0.472
SRR9715739	Root	6.657
SRR9715742	Root	1.860
SRR9715743	Root	2.498

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	27.224
SRR8749028	MeJA induced 9h	16.972
SRR8749029	MeJA induced 9h	10.428
SRR8749030	Uninduced	0.789
SRR8749031	Uninduced	0.123
SRR8749032	Uninduced	0.573

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.123
SRR8400027	Control - Root	8.886