Gene detail

Gene detail information of Glyur000086s00011509

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29200.2	2.00E-178	O-fucosyltransferase family protein
NR	XP_004485909.1	0	PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q8W486\|Y1491_ARATH	2.00E-57	Uncharacterized protein At1g04910
trEMBL	tr\|A0A072V4M7\|A0A072V4M7_MEDTR	0	GDP-fucose protein O-fucosyltransferase {ECO:0000313\|EMBL:KEH36621.1}

Sequence

Transcript Sequence

>Glyur000086s00011509.1
CTTCAATTCTAATGGATTGGTGGTTCCGTTTTGGAAACCAAAAGAGTCGGCAACACAAAAAATTTCAGGCTTTTGGAGTTCCTCTCCTCCTCCTTGTTTTTGTGCTCATTTTCCATCTNTCAACCGACCATCATTGGCCATTGACCATATATTTATATTCATATTATTGGAAAAAGAGATGGGTGAGACCAACTTGAATAGTTGAACTCAAAGTTTAAGTCTTTAGTCACTTTGAGCTTCATTGATTGATGATGGTATAATGGGGAAACAAGGGTCTCCCAGAAGTCCACGTCCTGAGTTTCAGGGTGATAGAGTAATCTCAGGAATGAAGGATTACAAGATAACAAGCAGTGATGTTCCTCCTTCTTGGAAGAGGGTNGCAGGGGTTGATTGCCGTTGGCATTCCAAGACTTTGTTGCTGCATGGGCTGAAAAATGATTCTTCAAAATACAATTCTCTTAGGGGGATATATGTTGGGAAAAAGCACATCAGGACCATTGTTAAAATGTTTGGATTGTTGGGTTGCCTTTTCCTTCTTGATTCTCTTATCATCTCCTTTTTTGAGTTTTCAAATCTTCAACCCAGTACAGCCTCAAATAATTCAAGTGAGCTTCAGGGTAGAGAATTCTACATCAATGAGAAACAATCGCCTGTTTATATGTATGGTCGGCTTGTAAACTTGGCCTCCAGTGCTCTTGCACAGAAGGAGTTCAAGCAAGAGCCATCCAATTTATGGGTGGAACCATATCGGAAGGCATCTTCATGGAAACCTTGTGCAGAAAGAAAAGTTCAAACCAATCCGGGGAAGTCTGCGAAAAGTAATGGCTACATCTTGGTCAGTGCAAATGGTGGTCTTAATCAACAACGAGTTGCTATTTGCAATGCTGTGGCTGTGGCATCTCTCCTTAATGCAACTCTANTTATTCCAAAATTTCTTTACAGCAACGTATGGAAGGATCCAAGCCAATTTGGTGACATATACCAGGAGGAGTATTTCATGAATATCCTGAAGGATGATATCAGTATTGAAAAGGAACTCCCACCTCATATGAAATCTCTGGATGCAGAAGCAATTGGTAGCAAGATTACAGATGCAGATCTTGCAAAGGAGGCCACATCTGCTGACTATANTAAAATTGTGCTTCCTCTTCTTTTGAGAAATGGAGTTGTTCACTTCCTTGGATANGGAAATCGACTTGGTTTTGATCCAATGCCTTCTCATATTCAGAGGCTAAGATGCAAATGCAATTTCCATGCTTTGAAGTTCGTCCCAAAAATTCAACAAGTTGGCTCGCTATTGATCAAAAGGATTAGAAAATATAGTGCTCCACGAGGCATGTTAGACACTCAGTTGCTGGGGAAGTTCATCCACAACAAGGAAGATCANGAAGCTGCAAGGGGCTCAACAAAATATCTTGCTTTGCATCTAAGGTTTGAAATAGATATGGTGGCCTATTCCTTGTGTGAATTTGGAGGAGGGGAAAATGAAAGAAGGGAACTTCAAGCCTATAGAAAAAGACATTTCCCTCTGTTTCTTGAGCGCTTGCAGAACTCAACAATCTCTATTTCTCAAACGGATTTGAGAAAAAAGGGAAGATGCCCATTGACACCAGAAGAAGCAGCACTTGTTCTAGCAGGTCTTGGTTACAAAAGCGGGACTTACATTTACTTGGCCGGTTCTCATATTTATGGGGGAAACTCAAGAATGGAGCCCTTCACTAGACTTTATCCCAACGTGGTCACAAAGGAAATCCTGCTTACACCAAGTGAACTAGCACCTTTCAGGAATTTTTCATCTCAGCTGGCTGCTTTGGATTTTATAGCATGTGCAAGTGCTGATGTATTTGCCATGACTGACTCTGGTAGCCAACTTTCATCATTGGTGTCTGGATTCAGAACCTACTATGGTGGCNGTCACGCTCCTACCTTGCGGCCTAACAAGACGAGGCTAGCTACAATTTTGACGGAGAATGGCACCATAGGATGGAACCGTTTTGAATTCAGGGTAAAGAAGATGATTCTGGAAGCTCAGAAGGCTGGCAATAGCATAAGGAGTTATGGACGAAGCATTTATAGACATCCTAGGTGCCCAGAGTGCATGTGCAAACAACATTAGCTAGCTAGTCCTTGCATTAGCAAACCTCAACACTTGTTAATATATAACACTGTTTGAGATTGAATTTCATTAGTTTCTTTTCCTGTCACTTTTTCAGCTTCATATGATTATGATATTCTTCGGTCACGATCCTTTATACAAATATTGAAATTGTCAATATCCTTTTTTCCCCCAAAGAATGAGTTNAATTGATATAATTTATGGTTATAGTATCATTTTCATGTGTAAAAAATTGTACAAGGAGTAAATAATCTTGACTTGAATATTTTTCTTTTAGAAAAAAGGCCATGAAGAAGTCTATCTCAAACTTACATAGTTATCACTCTTCTTCCCTCTCATACCAACAAAATATATAACCCTCTATGGAAAATGATACTTTTCCTCTAACATCTTTCTTCATGATACATAACTTCCTTAGTTAAGATGGAGGGAAAAACCGGTTGAGGTTGAAAGGGAGGGTGTAGAACTCTTCATTCCTACTATCTCCATCAAATGTTCTAAACTTGGCCCACCATGGCATTCCCCTGTCTTTGGCGCTACCCTTGTAATCAAGAGTGTTGTCCAAGAACACAGCAATAATCAATGCAATAGTTGGGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	96787	101540	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011509.1	PF10250.4	O-FucT	193	555	4.80E-85

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.119
SRR1783600	control	1.169
SRR1783602	moderate drought stress	0.864
SRR1811619	moderate drought stress	0.642

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.005
DRR006520	Root Summer glycyrrhizin high producing strain	3.007
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.266
DRR006524	Root Summer glycyrrhizin low producing strain	2.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.123
SRR2868004	Drought Stress (root)	4.133
SRR2967015	Control (root)	2.888

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.168
SRR9715740	Leaf	2.809
SRR9715741	Leaf	1.168
SRR9715739	Root	0.423
SRR9715742	Root	2.535
SRR9715743	Root	1.575

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.076
SRR8749028	MeJA induced 9h	0.791
SRR8749029	MeJA induced 9h	1.047
SRR8749030	Uninduced	0.383
SRR8749031	Uninduced	0.077
SRR8749032	Uninduced	0.051

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.264
SRR8400027	Control - Root	1.827