Gene detail

Gene detail information of Glyur000086s00011508.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18710.1	0	Protein kinase superfamily protein
NR	AFK40474.1	0	unknown [Medicago truncatula]
COG	YP_008149401.1	1.00E-23	hypothetical protein SCE1572_14835 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q39011\|KSG7_ARATH	0	Shaggy-related protein kinase eta
trEMBL	tr\|I3SJN2\|I3SJN2_MEDTR	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK40474.1}

Sequence

Transcript Sequence

>Glyur000086s00011508.1
AGAAAAGAAAGGCGGGGGGAAAAAGGAGAGCTGGAATCACATGGACTTGTCTTTCTCTTGCTGGGGCCTCCATTTTCCTCTCTACGTTCACACCTTCTCTTTCACCATTCTCTCCCTCTTCTTCACCCTTCCTTAGATTCCTCTTCTTTCTTCTCCCCTCTGCCATGGCTGAGGATAAGGAGATGTCTACTTCTGTTATCAATGGGAATGATTCCCTCACTGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAGCCCAAACAGACTATTAGTTACATGGCAGAACGCGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACCGGGGAGGCAGTGGCCATTAAGAAGGTTTTACAAGACCGAAGATATAAGAATCGTGAACTACAGTTGATGCGTGTGATGGATCATCCAAATGTGGTCTCTTTGAAGCATTGTTTCTTTTCCACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATCGGGTCTTAAAGCACTATAATAATGCTAATCAAAGAATCCCAATCATCTATGTAAAACTTTACATGTACCAGATTTTCAGGGGTTTGGCTTATATCCACACTGTTCCTGGAGTTTGCCACAGGGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTTACACACCAAGTCAAGCTATGTGATTTTGGAAGTGCAAAAATGCTAGTCAAGGGTGAAGCTAATATATCATACATATGTTCACGTTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTCCTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTGGACCAGCTCGTACATATTATAAAGGTACTTGGAACACCTACTCGGGAGGAAGTACGCTGTATGAACCCCAATTACAATGACTTTAGGTTTCCACAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCATCCCGGCTTTTGCAATACTCCCCAAGTCTTCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAACTCCGAGATCCCAATGCTCGCCTGCCAAATGGTCGTCCATTACCTCCTCTATTCAACTTCAAACAGGAATTAGCAGGAGCATCTCCAGAGCTGGTTAATAAGTTGATACCTGATCACGTGAAGCGGCAAATAGGGCTACAATTTGTTCATCNGGGAGGATCATGAGTCGCGATGATAAGCATAGGGCACAGTGTATACTAGCCNATAAGTTAAAACAAAATTGGCACCATTATTTTTGTCTAAATTATCATGTTTCTGAGGCCTGGCCAGTGTAGTTTCATGCTGAACCTGGACTGAGACTTGGGGTGCTGGATGGCTGCAGTTGATCCCTCAGTATGTGTATACCTTTTGACTCTCTCTGTTGATTCTGATGGATCTTTATTTCCCCAGGAAAAAATAGCCTTTTCCCTTCCATGTTTATTGTAAGCGTCTACATGTCATGATGGTATAGTTTGGCCTAAATTGGTCAGAATGCTTNTGAGGGGAAAAACCAAACCCTTAGCTGGATGGAGGGTCCAGACAGAAAAAAAGATGGGTCCTTTGGAGTTTTGATGGTGGTGGGCTATGTTGGTTGGTTGTTGGGTTTGGTTTTTCTTACTTCCCCCAATGTTAATATGTGCCTTATTTGCAATGTTGCCAGACGAGTNACTTTCCTTGTCAAATGTAATGTGCTATCTGTTTCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	90339	94628	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14502	BIN2	EC:2.7.11.1	Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011508.1	PF00069.20	Pkinase	43	324	1.40E-63

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	252.329
SRR1783600	control	253.103
SRR1783602	moderate drought stress	228.344
SRR1811619	moderate drought stress	225.827

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	186.823
DRR006520	Root Summer glycyrrhizin high producing strain	185.382
DRR006521	Root Winter glycyrrhizin high producing strain	199.236
DRR006522	Root Winter glycyrrhizin high producing strain	193.842
DRR006523	Root Summer glycyrrhizin low producing strain	321.956
DRR006524	Root Summer glycyrrhizin low producing strain	319.977
DRR006525	Leaf Summer glycyrrhizin high producing strain	65.851
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.945

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	173.063
SRR2868004	Drought Stress (root)	191.285
SRR2967015	Control (root)	201.351

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	104.876
SRR9715740	Leaf	110.758
SRR9715741	Leaf	128.557
SRR9715739	Root	315.452
SRR9715742	Root	224.693
SRR9715743	Root	241.578

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	148.113
SRR8749028	MeJA induced 9h	186.477
SRR8749029	MeJA induced 9h	139.529
SRR8749030	Uninduced	102.792
SRR8749031	Uninduced	84.374
SRR8749032	Uninduced	98.590

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	233.999
SRR8400027	Control - Root	232.665