Gene detail

Gene detail information of Glyur000086s00011507.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G45780.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006594544.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780-like isoform X1 [Glycine max]
COG	YP_004092358.1	9.00E-24	serine/threonine protein kinase with PASTA sensor(s) [Ethanoligenens harbinense YUAN-3]
Swissprot	tr\|C0LGU5\|Y5457_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At5g45780 (Precursor)
trEMBL	tr\|I1M1S0\|I1M1S0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G30050.1}

Sequence

Transcript Sequence

>Glyur000086s00011507.1
ACTGTCCTGTTCCCAAATCTCGAGCTNTCTTCCTGGTCTTACGAGTTCATTTCATTTCAATTTTCCATTTTTTTACTTTTTTTTTTAAATTTCGTTGTCCTTTTCAACTTCGCTTCTCTCGAGGCAGCTATCACGAGAGATTTTCCAAAAGGGTTTTGCTTGCTTTTATCCCCTGCTTTTCCAAAAGCCCAGAACCAAAGGTCCCAGTAAAAAAAGTTTCAGACTTTCTAGCTTCCCACTACTTCAATCTGTGTTTTTTTTTTGTTTCATGGAAAGTTTCAAAGTGGTTGCTTGGCTCTTTTCCTTCTTTCTGTGNAATTTGGTGCCAGTGGTTGTTGAGGGCACTGATAGCCTTCTTTCTCCAAAGGGTGTCAACTATGAAGTGGCTGCTTTGATGTCCATGAAGAGTAAGATGAGTGATGGCTTGCATGTCATGGATGGTTGGGATATTAATTCGGTTGACCCTTGTACTTGGAACATGGTCGGTTGCTCTGCAGAGGGTTATGTGATTTCACTATTTTATGCGTTATTAATGGCATTTGTTTTTCAAGCTGTAAGGATATTGATCTATGTTGCTAGTGGTAATTTGCCGATTGTTTGTGGCAGGGAAATGGCCAGTGCNGGTTTATCTGGAACAATTTCCTCAGGAATTGGAAATTTGAGCNACCTCCAAACATTGTTACTGCAGAACAATCAATTATCTGGTCCTATCCCAGCTGAGATAGGAAACCTGTTAGAGCTAAAGACCCTTGATCTTTCTGGNAACCAGCTTGTTGGGGAAATTCCTAGTTCTTTGGGCTTTTTGACTCATCTTAGTTACTTGCGGCTAAGCAAAAATAAACTATCTGGACAGATCCCACAACATGTTGCTAATCTCACAGGACTTTCGTTCTTGGATTTGTCATTCAATAATCTCAGTGGTCCAACTCCAAAAATTTTAGCAAAAGGAAACAACTTCCTCTGTACATCTTCCTCCCAAGTTTGCATGGACATTTCAAAACCAGTAAATGATACTGCAAGGTCATCTCAGACGGTCAACAGTCATCACCATAGGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCAGTGGTGCTGCTTGTCTTTTGGTTGCGTTGGTACAGATCACGCGTCCTCTATACATCTTACGTGGAGCAAGATTGTGAAATTGGTATTGGTCATTTAAAGAGGTTTTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTCAGTTCAAAAAATATCCTAGGACAAGGTGGTTTCGGTGTTGTATACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTAAAGAGACTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTGCATCTTTATGGATTTTGTATGACACCAGATGAAAGATTACTTGTTTATCCATACATGCCGAATGGTAGTGTTGCCGATCGCTTGAGAGAGACTTGCCGTGAAAAGCCATCTTTGGACTGGAACAGGCGAATGCGTATTGCTCTTGGGGCTGCACGTGGGCTTCTGTATTTGCATGAACAGTGCAATCCAAGAATAATCCACAGGGATGTTAAGGCTGCAAACATTTTGTTAGANGAAGGTTTTGAAGCTGTGGTGGGGGATTTTGGTCTTGCTAAGCTCTTAGACCAAAGGGATTCACATGTAACAACTGCAGTGCGGGGTACTGTAGGGCACATTGCCCCCGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGGTTTGGCATATTACTTTTGGAGCTCATAACAGGACAAAAGGCATTGGATGCTGGAAATGGTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAAAACCTTATGCGANGAGAAGCGGTTGGAAGTGTTAGTTGATAGGGATCTGAAGGGGTGTTTTGATCCGGAAGAGCTAGAAAAAGCAGTGGAGTTGTCTTTGCAGTGTACTCAGTCGCTTCCGAGTTTGAGGCCAAAGATGTCAGAAGTTTTGAAGATTCTACAAGGGCTGGTTGGGCAGTCAGTGAGGCCAGAGGAGTCACAAGGAGGGGCTAACCTATATGATGAAAGGACTTGCAGTTTCTCTCAAAACTATAGTGATGTTCACGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	84637	89009	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011507.1	PF08263.7	LRRNT_2	36	75	1.20E-07
Glyur000086s00011507.1	PF00560.28	LRR_1	134	155	1.3
Glyur000086s00011507.1	PF13855.1	LRR_8	158	216	3.60E-09
Glyur000086s00011507.1	PF00069.20	Pkinase	326	594	5.50E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.846
SRR1783600	control	3.872
SRR1783602	moderate drought stress	3.527
SRR1811619	moderate drought stress	3.435

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.699
DRR006520	Root Summer glycyrrhizin high producing strain	3.733
DRR006521	Root Winter glycyrrhizin high producing strain	7.347
DRR006522	Root Winter glycyrrhizin high producing strain	7.113
DRR006523	Root Summer glycyrrhizin low producing strain	7.116
DRR006524	Root Summer glycyrrhizin low producing strain	7.093
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.739
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.905
SRR2868004	Drought Stress (root)	13.404
SRR2967015	Control (root)	17.885

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.988
SRR9715740	Leaf	2.240
SRR9715741	Leaf	2.316
SRR9715739	Root	1.600
SRR9715742	Root	3.836
SRR9715743	Root	4.314

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.126
SRR8749028	MeJA induced 9h	20.079
SRR8749029	MeJA induced 9h	14.605
SRR8749030	Uninduced	7.848
SRR8749031	Uninduced	5.910
SRR8749032	Uninduced	9.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.350
SRR8400027	Control - Root	23.838