Gene detail

Gene detail information of Glyur000086s00011504

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G18760.1	1.00E-87	receptor like protein 51
NR	KHN47409.1	0	Probably inactive leucine-rich repeat receptor-like protein kinase [Glycine soja]
COG	YP_004775215.1	1.00E-24	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|O82318\|Y2579_ARATH	2.00E-26	Probably inactive leucine-rich repeat receptor-like protein kinase At2g25790 (Precursor)
trEMBL	tr\|V7BSM0\|V7BSM0_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW20018.1}

Sequence

Transcript Sequence

>Glyur000086s00011504.1
ATGAGACCACCGCCGCCGCCACTTGCACTTGTTTTCATTCTTCTCTCCTTCCTCTCCCCCACCATTNCTACTACCCCATCTCATGACCCTCTACCTCTCCCTCCAACCCCTTCCCCAACCTCTCCTCCATCATCATCAAAATCACCATCTTCTCCTTCNTCCAGTTCCAGTAGTACCCTTGACCCAAAGCAGGTACTAGCCCTGGAATCCCTCAACATCCCAACCTCAAAGGACCCATGTTCTCAACCCTCCTTCCACAATGCCACCCTCTGTGACTCATCCAAGCCCTTTCGCCACCTCATCTCCCTCTCCCTCTCAAACTGCTCCTCCTACGTGGCACTCTCCTTCACCGCCCTCAAATCCCTCTCAACCCTTCGATCCCTTCNGCTCCTCAACTGCCCCGTCGCACCCATTCGCTTCCCTCCCGAACTCATTGCCTCCCTCCGATCCTTCACCGCCGTCAACAGCNTCCGNANNGTCTCCGGCGTTTGGCTCTCTCAGCTTCACAANCTNACCGATCTCACTGTCTCCAATGTTCAGGTCAAAGCCTCTGGACCTTATGTCATCCTTGCCCACATGGACAAGCTCAAGTCTTTGACCATTTCCAATGCTAATCTCACCGGTTCTCTACCTGGGCACATCCATTCCAACCTTACCCACATCGATTTCTCTGGCAATCACCTCAAGGGAAACATACCCACTTCCATTACCATGCTTGATAGCCTCGAAATTTTGAATCTTTCTTCCAATGCACTCAGTGGGGAAATACCTCCTTCCGTTGGGGACTTGATTTCGCTTAAAAACCTCTCTTTGGCTTCAAACTCCTTTTCTGGGTCTATTCCTGATTCNATTTCTGCTGTACCCGGTTTGGTTCACTTGGATCTGAGCTCAAACCAGCTCAATGGGACTATTCCAAAGTTCATTTCTCAAATGAAGAGCCTCAGGTACTTGAATCTGGGAAACAACAACCTTCNTGGGGTGGTGCCTTTCAACGTGACTTTCATGAAGAGATTGGAAGTGTTCAAGGTTGGTGGGAACAGCAACCTGTGCTATAATCACTCGGTTGTGTCTTCAAAAATGAAGCTTGGGATTTCCCCTTGTGATAAGTACGGAATGCCGGTGTCTCCNCCTTCAAAGGATTCTTATGCAGATGATAGCAGTGATGGGGATTACGATGACGGTGATGAGGATGGTAGCAGGCACAAGACGGAGCACCATCATGGGCCAAACAAGTTCGTTCTTGGTGTGGCAATCGCACTCTCTTCCATTGTCTTTCTCATTGTTCTTTTAATCGTATGCTCTAAATGTTGTCGCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	69490	70806	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011504.1	PF13855.1	LRR_8	216	275	4.40E-08
Glyur000086s00011504.1	PF12799.2	LRR_4	289	325	8.70E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	26.081
SRR1783600	control	25.278
SRR1783602	moderate drought stress	14.450
SRR1811619	moderate drought stress	14.322

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.468
DRR006520	Root Summer glycyrrhizin high producing strain	11.129
DRR006521	Root Winter glycyrrhizin high producing strain	0.254
DRR006522	Root Winter glycyrrhizin high producing strain	0.248
DRR006523	Root Summer glycyrrhizin low producing strain	7.653
DRR006524	Root Summer glycyrrhizin low producing strain	7.477
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.060
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.802

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.869
SRR2868004	Drought Stress (root)	6.482
SRR2967015	Control (root)	9.248

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.575
SRR9715740	Leaf	1.018
SRR9715741	Leaf	1.784
SRR9715739	Root	16.657
SRR9715742	Root	12.113
SRR9715743	Root	13.645

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.697
SRR8749028	MeJA induced 9h	9.369
SRR8749029	MeJA induced 9h	7.505
SRR8749030	Uninduced	3.031
SRR8749031	Uninduced	0.415
SRR8749032	Uninduced	0.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.699
SRR8400027	Control - Root	13.718