Gene detail

Gene detail information of Glyur000086s00011494

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G30340.1	9.00E-88	nodulin MtN21 /EamA-like transporter family protein
NR	KHN47404.1	0	Auxin-induced protein 5NG4 [Glycine soja]
Swissprot	tr\|Q9LI65\|WTR24_ARATH	5.00E-107	WAT1-related protein At3g30340
trEMBL	tr\|I1MEV1\|I1MEV1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G09180.1}

Sequence

Transcript Sequence

>Glyur000086s00011494.1
GGAATTGCATTGATGAAAATGGAGACTTGTGATGAATGGAAACCTTTTATAGTAATGATAGCAATTGATTTTTCTTTTGCGGCAGTGAATATTCTTCTCAAGAAAGTCCTTGACGAAGGAATGAACCATTTGGTTTTTATCACATACCGTCTCTCAATTGCTACCATTTTCGTAGCCCCAATCGGCTACTTTTGGGAAAGAAATGGAAGACCAAGGCTCACATTTCGAATTTTATGTTACCTCTTCTTCAGTGCCATTGTTGGGGCATCAGTCACTCAATACTTTTTCCTTCTGGGGATCCAATATACTTCTGCTACATTTGCTTGTGCTTTCATCAACATCGTGCCCGTGATCACGTTTATAATGGCATTTCCATTTGGGTTAGAGACTGTGAACATCAAACGCACCAGTGGGAGAGCGAAGATTCTTGGTACATTGGTGTGCGTAGGTGGCGCATTGATGTTGACACTTTACAAAGGAAAACCCCTGTTCAAGTTTTCTCACTATCAGTCTGCTGTGGCCGTTAGTTCTGCAGTAGCATCTACAAGGACAACGCAGAGATGGACTATTGGTGTGATAGCTTTGATCTTAGGAACCCTCTTTTGGTCATTTTGGTTCATTCTACAATCAAAGATAAGCAAGAGATACCCATGCCAGTATTCCAGCACAGCCCTCATGAGCTTCTTTGGAGCCATTCAATCAGCTGTCATTTGCTTCCTCACTGACCACAACTTGTCCATATGGGTTCTCAAAGGAAATATACAAATCATTGCTATTCTTTATGCTAAGAGGGGTCCTGTCTTTACTGCAGCATTCAGCCCTCTTGTTCAGATAATGGCAGCCATGATTGATATCCCTGTCTTGCATGAGCANCTTAATCTTGGAAGTGTGGTGGGGTCAATCTTGGTGATGATTGGATTATACATTCTTCTATGGGGTAAGAGCAAGGAGATGCAGAACCGTTTGGTTAAGTTAGTCCAGGAAGCTGAAGAAACGTCCAAGGAACAACAAGAGCCGCAACCACAAATACAACACTTAACAGTNTCTTGTGATTCCCGGTGACAGTGACCCCAAGTTATATGTTTAGGAGATGCCAAACAACTTAACTTTATTCACATGAAAGTCTTAAAGTTTGTATTTGCTTAAACGATTGACCGCAAAAATGTATAAGATGGAGAATTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00086	32907	36878	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000086s00011494.1	PF00892.15	EamA	20	151	1.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.332
SRR1783600	control	0.379
SRR1783602	moderate drought stress	0.548
SRR1811619	moderate drought stress	0.555

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.355
DRR006520	Root Summer glycyrrhizin high producing strain	6.413
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.472
DRR006524	Root Summer glycyrrhizin low producing strain	0.365
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.504
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.472

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.856
SRR2868004	Drought Stress (root)	27.358
SRR2967015	Control (root)	20.387

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.053
SRR9715740	Leaf	0.092
SRR9715741	Leaf	0.000
SRR9715739	Root	0.759
SRR9715742	Root	0.907
SRR9715743	Root	0.910

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.002
SRR8749029	MeJA induced 9h	0.050
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.629
SRR8400027	Control - Root	4.549