Gene detail information of Glyur000086s00011492 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62470.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004486276.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9LZP3|PP293_ARATH | 0 | Pentatricopeptide repeat-containing protein At3g62470, mitochondrial (Precursor) |
| trEMBL | tr|I1M1R0|I1M1R0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G29910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00086 | 25027 | 26934 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000086s00011492.1 | PF01535.15 | PPR | 227 | 256 | 0.00019 |
| Glyur000086s00011492.1 | PF13812.1 | PPR_3 | 259 | 289 | 0.041 |
| Glyur000086s00011492.1 | PF13041.1 | PPR_2 | 326 | 373 | 2.30E-10 |
| Glyur000086s00011492.1 | PF13041.1 | PPR_2 | 396 | 443 | 5.20E-14 |
| Glyur000086s00011492.1 | PF13041.1 | PPR_2 | 470 | 512 | 6.00E-09 |
| Glyur000086s00011492.1 | PF01535.15 | PPR | 540 | 568 | 8.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.262 |
| SRR1783600 | control | 25.566 |
| SRR1783602 | moderate drought stress | 22.997 |
| SRR1811619 | moderate drought stress | 23.058 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.053 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.995 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.640 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.087 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.988 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.754 |
| SRR2868004 | Drought Stress (root) | 26.246 |
| SRR2967015 | Control (root) | 23.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.369 |
| SRR9715740 | Leaf | 5.794 |
| SRR9715741 | Leaf | 7.237 |
| SRR9715739 | Root | 9.554 |
| SRR9715742 | Root | 17.090 |
| SRR9715743 | Root | 13.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.450 |
| SRR8749028 | MeJA induced 9h | 20.391 |
| SRR8749029 | MeJA induced 9h | 14.119 |
| SRR8749030 | Uninduced | 5.323 |
| SRR8749031 | Uninduced | 1.013 |
| SRR8749032 | Uninduced | 1.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 38.597 |
| SRR8400027 | Control - Root | 47.543 |