Gene detail

Gene detail information of Glyur000085s00008894

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26440.1	5.00E-16	WRKY DNA-binding protein 34
NR	XP_003624172.1	8.93E-144	WRKY transcription factor [Medicago truncatula]
Swissprot	tr\|O65590\|WRK34_ARATH	1.00E-28	Probable WRKY transcription factor 34
trEMBL	tr\|G7KRI1\|G7KRI1_MEDTR	3.00E-144	WRKY family transcription factor {ECO:0000313\|EMBL:AES80390.1}

Sequence

Transcript Sequence

>Glyur000085s00008894.1
GTTTGTGAAGGGGAAACAAAGATTACATTGCAGAATAAGCTTCTAATCCTCACCTTCATTGGTTTCAGCTCCACTCTTCTGGAGCTGAACCGAATAACCCCACCATCATCAACATTGAGATTGAGATTACAACAACAACACCATTATTCATTTCCATTCTCAATTCTAATTCCTTCTCTCTCTCAGTTAAGTCTCACCTCACCAACCCACCAACCAAAATGGAAGAAGACAACAACAGTAACAACAACAACGAAAGCAACAATGGGGGTGATGAAATATTTGTTCCTGGTTTTCCTGAAAAAAGAAGCATAGCTGAGAGAAGGGGTTTCAATTCCAATGCAGCAAGGATCAACACAGCGCTTTTCCGCGCTTCAACAACCCCTTTGTCTTCTCCTGCAGCTCGATCACCGCGTCTTACCATACCCCCTGGAATTAGCCCCACTGCATTGCTTGATTCTCCAATCATGCTTCCCAATTCTCAGGCCTTGCCATCACCTACTACTGGCACTTTCTTCATGCTGCCACCTCTCATTGATGAAGGAGGATCAATGCTCACTTCTGTCACACTTGAGCAGAGGAATGTGGATGCGCTGCCCACTGCCTCTGATGCTGCTGCTTCCTTCAAATTCAAGCCTCAATCCAATTTGGATCCTAATCCTTTACCTGCTTCTCTGAATCAGGTTCCTAGTAATTGCCATATGGTNAATGGAGGAAATAGAGATGGCCAAATACTTGTTCAAGGTCAACCACCATTGGATTTTTCATTCCCGGGAGATTTTCCAAAAGGCCATTCTGCTAGAAGTAGTGAAATCCATTTGTACCATGATGTGAAAATGGTAAACGATGCGATTGTTAATGCTAATAATAATGTTGAGATGCCAATATCTCGTTCTGAGGAAGCTAGTGATGAAAGCACCCTGCCTGAAAATGCTATTCATGAAATTGCTGAAGCCGGTGAAACTTACGATAAAGTTGATGCCNATTCAGTCTGGGGGAATATTCAGTCAGGAGTAAAAGACACAAAACACAGTTTGGAATGGAAGGCTGATGGTCAGGAAAGGACATCCTCAGCTTCTGTTGTGACTGAGCTTTCAGATCCTATATCAATGAAGAGAGGTAGATCTCTATGTATGTTTGAATCAGAGGACACTCCGGAGCTTTCTTCCACACTTGCTAGTCATGATGGTGATGAAGATGGAGCCACTCAAGCAGTTGTATCAGTTGAAGATGATGCCGAAGATGTTGAATCGGAATCAAAAAGAAGGAAGAAGGAGAACTACACAGTTGAATCAATTTTGCCTCCCAGGAATGTTCGTGAACCACGAGTGGTAGTCCAAATCGAGAGTGACGTGGACATACTTGATGATGGTTATCGCTGGCGCAAATATGGACAGAAGGTTGTCAAAGGAAATCCAAACCCAAGTGCCAGTATCCCAAAGCCCGAAACTCATCAAACTCTTGCTCCTCATTTTGATAGAAAACCTGAATTTAGCAATGATTTTCTGAGGTCCAGTTTGCTTGGAGGTTTCAGTAATGATATGAAGTTTGGACCTTCCTCCATATCCCAAATGAAGTATTCTTCCTTGAATAACACCATACCTTATGGCTCCTATGGACTGAATCCTGACCGTTGCACCGCCCCTCAAGCTGGATCTATTGCCTCAATGTTCCCTGATTTTCCAATGCCACTACCATTGAATCTTCCCTCATCTGGAAGTTTTTCTCTAGCTGGAATTAATTTTAACAGTGTGAAGCCAATGGCTTCTGTCCAGTCTTTCCTTTCAGGGCAGCAGGTGAAGGAGATTGACACAGGGTTCCTGAGGCCTAAACAGGAGCAGAAGGATGATACCATATATGGCACATGCATACCCTCTCTTGAACATTCAAGTTCCTCGCTCACTCCATCATCAGCATCACCATCCATTTACCAACGTGTTATGCAAAATTTCCCTTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	360524	364767	+

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008894.1	PF03106.10	WRKY	381	402	2.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.818
SRR1783600	control	2.750
SRR1783602	moderate drought stress	1.397
SRR1811619	moderate drought stress	1.431

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.260
DRR006520	Root Summer glycyrrhizin high producing strain	1.442
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.824
DRR006524	Root Summer glycyrrhizin low producing strain	0.780
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.993
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.903

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.730
SRR2868004	Drought Stress (root)	1.219
SRR2967015	Control (root)	1.294

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.973
SRR9715740	Leaf	0.861
SRR9715741	Leaf	1.044
SRR9715739	Root	0.130
SRR9715742	Root	0.477
SRR9715743	Root	0.514

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.300
SRR8749028	MeJA induced 9h	0.087
SRR8749029	MeJA induced 9h	0.096
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.099
SRR8749032	Uninduced	0.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.051
SRR8400027	Control - Root	2.156