Gene detail

Gene detail information of Glyur000085s00008887.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47390.2	0	cytidine/deoxycytidylate deaminase family protein
NR	XP_004492842.1	0	PREDICTED: riboflavin biosynthesis protein RibD-like [Cicer arietinum]
COG	YP_007081858.1	4.00E-103	diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9STY4\|RIBR_ARATH	0	5-amino-6-(5-phosphoribosylamino)uracil reductase (Precursor)
trEMBL	tr\|A0A072U1X8\|A0A072U1X8_MEDTR	0	Riboflavin biosynthesis protein RibD {ECO:0000313\|EMBL:KEH23396.1}

Sequence

Transcript Sequence

>Glyur000085s00008887.1
CCCTTGACAACACCCACTTACATGCCGCAAGCATTCTGGTGTCGTGGACGATGCAATGTTGAGTCTCACTCCAATCGCGAACCTCTCTTCTTCCCTCATCTGCAAATGCAAAGCTTCCGTTGACCCTCGCANCCACGCGCTCGACGCCGCTTACGTCCGACGCGCCGCCCTCATCGCCGACAAATCCGCCGGCATCACCTCCCCCCATCCCAACTTCGGCTGCGTAATCGCCACCCCCTCCGGCGATGTCGCCGGCGAGGGATACCTCTACGCGCAGGGCACCACTCCCGCCGAGGTTCAGGCCGTGGGCGCCGCCGGCGAGCTCTGCCGCGGCGCCACCGCCTACCTCAACATGGAACCCGGTGACTGTGACGGTGACAACACTGCCGTGTCTGCCCTTCTTCAGGGTGGGGTCAAAAGGGTTGTCATTGGAATGAGACACCCCCTTCAACATTTTCGGGGCAANGCTGTGCGCGCCCTCAGGAGTCAAGGACTGCAAGTTGACCTTCTTGGAGAGGAGCTCAACAGTAAGCTTATAGAGGATGCCCAGAAAGAATGTCATCTTGTCAATGCCCCTTTGATTTGTAGAGCTGCTTCGCNTGTTCCCTTTTCTGTTCTGAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCTAGCACTGGTCATTCATGGTGGATAAGCAGCAAGCTATCTAGAAATCTAGTTTATGAGCTGAGAGGTAGATGTGACGCGGTAATCGTGGGAGGAAATACAATTCGAAGGGACAATCCAAGACTGACAGCCAGACATGGAGGTGCACATATGCCAATTCGCATTATAATGTCTCAGACTCTCAATCTTCCAGAGGANGCAAACGTATGGGACATGTCAGAGGTTTCTACCATAGTTGTAACACAGAGGGGTGCAAGGAGGAGTTTACAGAAGCTGCTTGCATCTAAAGGAGTTGAAGTTGTGGAGTTTGACATATTGAATCCCCGAGATGTTATGGAGTATTTTCATGATCGTGGGTATCTTTCAATTTTATGGGAATGCGGAGGAACATTGGCTGCATCTGCTATTTCATCTGGAGTGATTCACAAGGTTTATGCATTTGTTGCTCCTAAAATTATTGGCGGAAAGAATGCACCATCCCCTGTGGGTGATCTTGGAATGGTTGAGATGTCACAGGCTATAAATCTCATTGATGTTTGCTATGAGCAGATTGGGCCTGACATGCTTGTTAGCGGATTTCTTCAGCCCTTACCAGACATAGTGCCTCCAATCCCATCACNGGAGGAAACATTTATTGTTGATCCTACTGTCTCACCATATGAGTCCAGCATCATATTTTTCTATAAAACATGGGATCCTTATGGTGCATTGTCAAATTTCTCTCCTCATCCCGTTGAAGTGCCTGATGAAAATGGTGATTATGTGACTTGGTTGAGTGTGGAGCATTACTACCAGGCACACAAGTTTTTCGGAGTGGATGATACTTCTGCACAAGATTGTATTGAAAGGATCAAATCTGCAAAAAGTCCAGAAGAAGCTGCAAAACTAGGAAGGTCAATGCAAAGGCAGCGACCTGATCTGATAAGGTCTGATTGGGACAACATAAAGATCGATGTCATGTACAGGGNACTGAAATGCAAGTTCTCAATGTACCCGCATTTGAAATCAATGCTGCTTTCAACTGCTGGTTCTGTTCTAGTCGAGGCTTCTCCACATGATCTCTTTTGGGGTGGAGGTCNAGAAGGAGAAGGCTTGAATTATCTTGGTCGACTGCTGATGAAGTTGAGATCTGAGTTTCTTGGGGAATCATCATCATCATCATCATCGACTGAGACCCCGAGTTTAACTGTATAGTATTTTTTGAAGAGACAAGAGAAGAGAAAACAATGTTTTTGTTGTAAAATTACCAAAATTANTTGTTGTGCAACATATATGCCATAATAATAAAAACATGGCAAATGCCAACAAGTGTCCTATGGCACTTGTTANG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	318849	323139	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11752	ribD	EC:3.5.4.26 1.1.1.193	Riboflavin metabolism	map00740
			Quorum sensing	map02024

Gene Ontology

biological_process

GO:0009231 riboflavin biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0008270 zinc ion binding

GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity

GO:0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity

GO:0016787 hydrolase activity

GO:0050661 NADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008887.1	PF00383.17	dCMP_cyt_deam_1	31	126	4.10E-05
Glyur000085s00008887.1	PF01872.12	RibD_C	186	388	1.10E-40
Glyur000085s00008887.1	PF08719.6	DUF1768	424	578	2.80E-44

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.026
SRR1783600	control	4.999
SRR1783602	moderate drought stress	3.887
SRR1811619	moderate drought stress	3.803

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.144
DRR006520	Root Summer glycyrrhizin high producing strain	3.967
DRR006521	Root Winter glycyrrhizin high producing strain	1.575
DRR006522	Root Winter glycyrrhizin high producing strain	1.286
DRR006523	Root Summer glycyrrhizin low producing strain	2.887
DRR006524	Root Summer glycyrrhizin low producing strain	2.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.234
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.580

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.868
SRR2868004	Drought Stress (root)	10.652
SRR2967015	Control (root)	10.694

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.634
SRR9715740	Leaf	20.120
SRR9715741	Leaf	13.505
SRR9715739	Root	4.374
SRR9715742	Root	5.459
SRR9715743	Root	4.724

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.402
SRR8749028	MeJA induced 9h	3.039
SRR8749029	MeJA induced 9h	2.504
SRR8749030	Uninduced	1.811
SRR8749031	Uninduced	1.143
SRR8749032	Uninduced	0.950

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.632
SRR8400027	Control - Root	7.744