Gene detail

Gene detail information of Glyur000085s00008885

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12910.1	2.00E-147	serine carboxypeptidase-like 20
NR	XP_003534508.1	0	PREDICTED: serine carboxypeptidase-like 20-like [Glycine max]
COG	YP_002430787.1	2.00E-22	peptidase S10 serine carboxypeptidase [Desulfatibacillum alkenivorans AK-01]
Swissprot	tr\|Q8L7B2\|SCP20_ARATH	0	Serine carboxypeptidase-like 20 (Precursor)
trEMBL	tr\|I1L697\|I1L697_SOYBN	0	Carboxypeptidase {ECO:0000256\|RuleBase:RU361156}

Sequence

Transcript Sequence

>Glyur000085s00008885.1
AACTTCCACATCTTGAGCTTGTACACGCGCGCGCGCCCTCACATTAATTATAAATATACTAATATCCACGCCTAGCTAGCTCCTAGCTTTATTTCATCAAAAACATACTGTAGTAGCTAGTGTTTGCGCACCCCCGGAGTTGGAGAGAGATCACCGAGCTGGCCGGGAGGATAATATATATAGCCGGAATTGTGGGGGTTAATGGGCATGGCCAATCACCAGTTACTACTCTATTATTGTGTTCTCTCCTTGCTTTTGTTGGGCCATTGGGCCTTTGTTGAAGCTGCCCCTGCAGCCTCTCTCATCACACAACTCCCTGGTTTTTATGGCAATTTCCCCTCCAACCATTACTCCGGATATATAAGTGTTGATGGGAATGCTGAAAGTGGTGGGAAGAACCTGTTCTACTACTTTGTTAGTTCAGAAAGAAATCCAGGAAAGGATCCAGTTGTTCTATGGCTGAATGGACCATTCAACTTCGAGGCTGCAAAAACTAAAGGGAACCTACCCACTTTGCATAACAATCCTTACAGCTGGTCAAAGGTTTCCAACATTATATATTTAGATTCACCCGCGGGTGTTGGCTTATCTTACTCAAAGAACTCAAGCAAATATGTTACTGGGGACCTACAAACTGCTTCTGATACCCATGCTTTCCTCTTAAAGTGGTTTGAGCAATTTCCAGAATTCCTGGCTAATCCATTTTATATTTCTGGGGAGTCTTATGCTGGAGTTTACGTGCCCACTATAGCTTTCGAAATTGTTAAAGGAATCCGGAGTGGTAGAAAGCCCGTGATCAACTTTAAGGGTTATATGGTCGGAAACGGTGTCACGGACGAAACATTTGACGGCAATGCTCTCATCCCGTTTGTGCACGGGATGGGCCTCATATCCGATAGCATCTACCAGAGTTTCCAACAATTAGGGGCTACAGAGAGGCCTCTCCCAGTGAGGAAGAGGATGTTTGGTAGAGCTTGGCCCTTTAGAGCACCCGTCAAAGATGGCCCTAGTGATGAAGTAGCAAGCTCGTGGCTAAACAACGATGCAGTCAGGAAAGCCATTCATGCTGAGCGGGAAAGTGTGGCTGGTCCGTGGGAATTATGCACCAATAGGATAGAGTACGATCACAATGCNGGAAGCATGATTCGTTATCACAAGAACCTAACCATGCTGGGCTATCATGCACTTATTTTCAGTGGCGACCATGATATGTGTGTACCATATACNGGAAGTGAGGCTTGGACCCGGTCTCTGGGATACAAGATTGTGGATGAATGGAGGCCATGGACCTCTAATAATCAAGTTGCTGGTTACTTACAAGCGTACGAGAACAACCTCATCTTCCTCACAGTCAAGGGAGCTGGTCACACTGTGCCGGAATATAAGCCGCTGGAGGCACTGGATTTTTACAGCCGTTGGTTGGAAGGAAAACCAATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	300659	307126	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004185 serine-type carboxypeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008885.1	PF00450.17	Peptidase_S10	39	240	1.90E-67
Glyur000085s00008885.1	PF00450.17	Peptidase_S10	269	409	3.00E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.609
SRR1783600	control	21.088
SRR1783602	moderate drought stress	21.236
SRR1811619	moderate drought stress	21.261

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.913
DRR006520	Root Summer glycyrrhizin high producing strain	1.887
DRR006521	Root Winter glycyrrhizin high producing strain	0.154
DRR006522	Root Winter glycyrrhizin high producing strain	0.150
DRR006523	Root Summer glycyrrhizin low producing strain	5.452
DRR006524	Root Summer glycyrrhizin low producing strain	5.671
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.380

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	145.775
SRR2868004	Drought Stress (root)	137.249
SRR2967015	Control (root)	86.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.383
SRR9715740	Leaf	5.005
SRR9715741	Leaf	2.184
SRR9715739	Root	81.242
SRR9715742	Root	81.634
SRR9715743	Root	83.874

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.363
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.335
SRR8749030	Uninduced	0.075
SRR8749031	Uninduced	0.024
SRR8749032	Uninduced	0.530

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	184.328
SRR8400027	Control - Root	128.249