Gene detail

Gene detail information of Glyur000085s00008879

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24090.1	0	glutamine-fructose-6-phosphate transaminase (isomerizing)s;sugar binding;transaminases
NR	XP_004492850.1	0	PREDICTED: glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2-like isoform X2 [Cicer arietinum]
COG	YP_004054146.1	2.00E-167	glutamine--fructose-6-phosphate transaminase [Marivirga tractuosa DSM 4126]
Swissprot	tr\|O19908\|GLMS_CYACA	3.00E-83	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000255\|HAMAP-Rule:MF_00164}
trEMBL	tr\|G7KRK3\|G7KRK3_MEDTR	0	Glucosamine-fructose-6-phosphate aminotransferase {ECO:0000313\|EMBL:AES80412.1}

Sequence

Transcript Sequence

>Glyur000085s00008879.1
ATTCAATCAATTATTCAATAAATCATTAAATCAATTCTAAATTATTATTCAATCATTATTTATTTATTTAAATTTATTTTTATATAAATAAAACCGAGTCTGAGTAGTGACTGAGTACGAGGAGTGGGTTCCTTTAAATTTAAAAGAAGAAAAGAGCGAAAAACAGAGATAGAGAAGGAGAAGAAGAAGAAGAAGAGGAAGAGGAAGAGGAAAGAAAAATGTGTGGGATATTCTCGTATCTGAATTACAACGTNAATAGAGAGAGGAGATACATCTTACAGGTGCTGTTCAACGGTTTGAGACGGTTGGAATATCGTGGATACGATTCCGCAGGAATCGCCATCGATTCTTCTTCATCATCACCGCAATGTTCCTCCGATTCCGATTTAACTTCATCTCCTCCTCTCGTCTTCCGCCAAGAGGGGAACATCGAGTCCCTCGTTAAATCCGTTTACCAAGAAGTTGGTGAAACGGAACTGGACTTGGAGCAATGTTTCAGCACTCACGCGGGAATTGCGCACACGCGTTGGGCCACTCACGGAGAGCCTGCTCCGCGNAACAGTCATCCCCAAACTTCTGGTCCTGGCAATGAATTCCTGGTTGTTCACAACGGAGTTATCACTAATTATGAGGTTTTGAAGGCAACACTGATCCGACATGGCTTCACCTTTGAATCAGAAACGGATACGGAAGTCATTCCCAAGCTTGCCAAGTATGTTTACGACAAAGCAAATGAAGCAGCCGGTGGTCAGGTTGTTACNTTCAGTCAAGTTGTTCTGGAAGTTATGAGGCATCTTGAAGGAGCCTATGCCCTTATTTTCAAAAGTCCACATTATCCTAATGAATTGATTGCTTGCAAGCGTGGTAGCCCTCTGCTCCTTGGTGTTAAGGAATTGACAGAAAATAAGGATAATGGTTCAGCATTTGAGGATAACAAATTCCTATCAAAAGATGGACAGCCCAAAGAACTGTTTTTGTCCAGTGATGCCAATGCTGTGATTGANCATACAAAGAAAGTGCTGGTTATTGAGGATGGTGAAGTTGTGCATCTCAAGGATGGTGGAGTTTCTATTTTGAAGTATGAGAATGACGAGGGAGAACATGGTGCTTCTCTTTCCAGAGCTTCTTCAGTACGACGTGCGTTATCTGTTCTTCAGATGGAGGTTGAGCAAATAAATAAAGGACATTATGAGCATTATATGCAGAAGGAAATTCATGAACAACCAGAGTCTCTAACAACCACAATGAGGGGGAGGCTTATACGTCTGGGATCTAGCAAATCCAAGTCNGTTCTGTTGGGTGGACTGAAGGATCACCTCAAAACCATTAGGCGAAGTAGAAGGATAGTTTTCATTGGCTGTGGCACAAGTTATAATGCTGCTTTGGCAGCTAGACCCATCTTGGAAGAACTTTCTGGTATTCCTGTTACAATGGAAATTGCTAGTGATCTATTGGATCGGGAGGGACCAATATACCGAGAAGATACAGCCGTTTTTGTTAGTCAATCTGGTGAAACTGCAGACACTTTACTAGCACTNCAATATGCTTTAGACAATGGTGCATTATGTGTTGGGATAACAAACACTGTTGGTAGTGCAATAGCAAGGAATACACATTGTGGTGTTCATATTAATGCTGGTGCTGAGATTGGTGTGGCAAGTACCAAGGCATACACGAGCCAAATAGTAGTGATGGCCATGTTGGCTCTTGCAATAGGAGGCGATACTATTTCCAATCAAGCGAGAAGAGAAGCTATTATAGATGGTCTTTTTGACCTGCCAAACAAAGTCAGAGAGGTGCTGAAGCTTGATCAGGAGATGATGGATCTAGCAAAGCTATTGATTGCTGAGCAGTCTCTTCTTGTCTTTGGGAGAGGATACAACTATGCAACCGCTCTGGAGGGAGCTTTGAAAGTAAAGGAAGTGGCACTCATGCATAGTGAAGGGATACTCGCTGGTGAAATGAAGCATGGCCCTTTGGCACTNGTGGATGAAAATCTTCCAATCGTTGTTATAGCCACACGTGATGCTTGCTTCAGCAAACAGCAGTCTGTTATTCAGCAACTTCATGCCCGCAAAGGTCGCCTGATAGTTATGTGTTCGAAAGGGGATGCTGCTTCTGTATGCCCTGTTGAATCTTGTAGGGTAATTGAAGTTCCACAGGTTGTGGACTGTCTTCAACCTGTAATTAATGTAGTTCCATTACAGTTACTGGCATATCATCTCACTGTACTAAGGGGATTCAATGTCGACCAGCCTCGTAATCTTGCCAAGAGTGTCACCACGCAATGAAGTTTGTTTACTACGTACCAAAAAGAGAAAAAGAAGTTTGTTGACTTCTCTTTCTTTTATTCTGACGAAAAATAATATCAAGGCCCTTTAAAAAGCTTCCCTTGCTCTGAGACATGATTTCGCTTGATGAACACTTCAATTCTTTGTCTTGGACAGGGTGGCATACTAGCGCATTGTAAATTGATAGATGTAGGCTCACTGATTNATCTACAAGCTACCCTCTCACCAGGCAGAGTAGACACCAATCATTTCTTGAGGTATTTGATGTATTTGTTTGATATGGTCGGAATGGTTATAGCATGGCCTTACATTGCAACCACGAACTACCACACTCCCATGAACAAAATCAAGTTCTTAACGAGAAAAAAACTGCCCCTGAAATTAAGACCCATGCCCCATAAATTTAAAGGTACACTGGCAAATTGGCAGTTTTATACATCAAACAGCGCGGAACAATGTTGCTGGCTCATTACATATAGAACTGAATCCTGTAGTAAAATTGACTTATTGTTCGAGCAAACATGCCTAAAATTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	255161	261577	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00820	glmS, GFPT	EC:2.6.1.16	Amino sugar and nucleotide sugar metabolism	map00520
			Alanine, aspartate and glutamate metabolism	map00250
			Insulin resistance	map04931

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0008152 metabolic process

GO:1901137 carbohydrate derivative biosynthetic process

molecular_function

GO:0004360 glutamine-fructose-6-phosphate transaminase (isomerizing) activity

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008879.1	PF00310.16	GATase_2	2	46	0.00011
Glyur000085s00008879.1	PF13522.1	GATase_6	88	210	2.30E-16
Glyur000085s00008879.1	PF01380.17	SIS	370	497	1.00E-31
Glyur000085s00008879.1	PF01380.17	SIS	542	672	1.30E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.517
SRR1783600	control	7.504
SRR1783602	moderate drought stress	5.959
SRR1811619	moderate drought stress	5.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.695
DRR006520	Root Summer glycyrrhizin high producing strain	12.421
DRR006521	Root Winter glycyrrhizin high producing strain	5.581
DRR006522	Root Winter glycyrrhizin high producing strain	5.442
DRR006523	Root Summer glycyrrhizin low producing strain	21.177
DRR006524	Root Summer glycyrrhizin low producing strain	21.191
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.125
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.131
SRR2868004	Drought Stress (root)	33.769
SRR2967015	Control (root)	23.294

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.674
SRR9715740	Leaf	13.969
SRR9715741	Leaf	36.409
SRR9715739	Root	6.140
SRR9715742	Root	22.956
SRR9715743	Root	18.886

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.839
SRR8749028	MeJA induced 9h	18.916
SRR8749029	MeJA induced 9h	17.981
SRR8749030	Uninduced	38.541
SRR8749031	Uninduced	12.848
SRR8749032	Uninduced	10.013

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.631
SRR8400027	Control - Root	15.554