Gene detail

Gene detail information of Glyur000085s00008873

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G08450.1	8.00E-165	calreticulin 3
NR	XP_003624204.1	0	Calreticulin-3 [Medicago truncatula]
Swissprot	tr\|O04153\|CALR3_ARATH	0	Calreticulin-3 (Precursor)
trEMBL	tr\|G7KRL3\|G7KRL3_MEDTR	0	Calreticulin {ECO:0000313\|EMBL:AES80422.1}

Sequence

Transcript Sequence

>Glyur000085s00008873.1
CAACATCAATTTTCTTTTCCCAGTGAGAAACACGCCCAAGAGCATAAACAAAAATGACCAAGCGTTACTATTACAGCATTTTAGCGTGGTGGCATATTAGTAATTAGGNCGACACAAGGGGGCAATGAAGTAGGTTGGTTTTCTATAAGTAAGCTCAACTCTGCAACTGGGAGTAGGCAGTGACACAGAGCAAATATAGCTTATTCCGCAAATGGCGGAAACCGCTTTAACTGAAANGAAGGTGTTAGTTTTATTCTGTTTGTTGCTAATACAAGTTTCAGTTTCTGAAATCATTTTCGAAGAGCGCTTCGAAGATGGATGGCAAAGTCGCTGGGTAAAATCAGACTGGAAAAGGAGTGAAGGCAAAGCAGGTTCATTCAAGCACACGGCTGGAAAATGGGCTGGAGACCCAGATGATAAAGGTATCCAAACATCTAATGATGCCAAACACTTTGCCATCTCTGCAAAGATACCAGAATTCAGCAACAAGAACAGAACATTGGTCCTCCAGTATTCTATAAAATTTGAGCAAGATATTGAGTGTGGTGGAGGTTACATGAAGCTCCTCTCTGGATTTGTTAATCAAAAGAAATTTGGCGGGGATACGCCTTATAGTGTAATGTTTGGACCAGATTTATGTGGCACAGATACAAAGAAGCTTCATCTTATACTCTCTTACCAAGGTCAAAACTACCCAGTAAAGAAGGACCTGCAATGTGAAACTGACAAGTTAACTCATTTCTACACATTCATTCTAAGGCCAGATGCTTCATACAGTGTCCTGGTTGATAATAGAGAGAGAGATTCGGGAAGCATGTATACGGATTGGGACATTCTTCCTCCACGAAAAATCAAAGATGTCAAGGCAAAAAAGCCTGCAGACTGGGATGACAGGGAATNCATTGAAGACCCTAATAGTGTCAAACCTGAGGGATATGATTCAATCCCAGCAGAAATTCCTGACCCAAATGCTAANGAGCCTGATAATTGGGATGAAGACGAAGATGGAATATGGAAAGCACCGAAGATACCAAATCCAGCATACAAAGGACCATGGAAACGAAAGAAAATCAAGAACCCTAACTACAAAGGAAAATGGAAAACTCCATGGATAGATAATCCAGAGTTTGAAGATGACCCTGATCTTTATGTGCTTAAGCCTATCAAATATGTCGGCATTGAAGTTTGGCAGGTTAAAGGCGGTTCAGTTTTTGACAACATTTTGATTTGTGATGATCCTGATTATGCAAAACAAGTTGTTGATGAAGTGTTTGCCAACAGGGAGATTGAAAAGGAGGCTTTTGAGGAAGCAGAGAAAGTGAGAAAAGAAAAAGAGGAGGAGGAGGCTCAAAGAGCAAGAGAAGAAGGTGAAAGGCGGAGACGAGAGAAAGGTTATGATCGACGACACCGGGANAGATATAGAGACAAATATAGAAAGCATCGCCGTGATTACATGGATGATTATCATGATGAACTCTGATGGAATGAAACGCCCTTCTTTCTTATCTGTTATCTGGTTGACAAGAATTTATTTAGTGTTATGGATTATGATTACGTTGATATTGGTGTATGTTCCATCTGGTGTTAATTTATTGGAAACTTTTTCAAGAATAAAATAGTTGGTTCGAAGCTTGCTGCAAAGGCAATTGTGATGTGCACGAGTTTTTTTTTAGGAATGTTGGTACGTTCTTCACATCATATTAAATTTTATAAATATTGTGATTGTTTGACACGAAAATAAGGTTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	219710	224774	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006457 protein folding

cellular_component
GO:0005783 endoplasmic reticulum

molecular_function

GO:0005509 calcium ion binding

GO:0005515 protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008873.1	PF00262.13	Calreticulin	28	339	3.50E-108

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.352
SRR1783600	control	27.402
SRR1783602	moderate drought stress	21.085
SRR1811619	moderate drought stress	20.859

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.073
DRR006520	Root Summer glycyrrhizin high producing strain	37.680
DRR006521	Root Winter glycyrrhizin high producing strain	6.606
DRR006522	Root Winter glycyrrhizin high producing strain	6.275
DRR006523	Root Summer glycyrrhizin low producing strain	53.919
DRR006524	Root Summer glycyrrhizin low producing strain	53.450
DRR006525	Leaf Summer glycyrrhizin high producing strain	148.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	146.827

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	72.323
SRR2868004	Drought Stress (root)	103.070
SRR2967015	Control (root)	78.942

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	383.134
SRR9715740	Leaf	244.781
SRR9715741	Leaf	399.170
SRR9715739	Root	5.730
SRR9715742	Root	58.192
SRR9715743	Root	47.792

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.147
SRR8749028	MeJA induced 9h	4.159
SRR8749029	MeJA induced 9h	5.321
SRR8749030	Uninduced	3.748
SRR8749031	Uninduced	0.350
SRR8749032	Uninduced	0.339

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	51.794
SRR8400027	Control - Root	68.271