Gene detail information of Glyur000085s00008870 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03310.1 | 7.00E-131 | lecithin:cholesterol acyltransferase 3 |
| NR | XP_004492863.1 | 0 | PREDICTED: phospholipase A(1) LCAT3-like [Cicer arietinum] |
| Swissprot | tr|Q93V61|LCAT3_ARATH | 1.00E-160 | Phospholipase A(1) LCAT3 |
| trEMBL | tr|G7KSE0|G7KSE0_MEDTR | 0 | Lecithin:cholesterol acyltransferase family protein {ECO:0000313|EMBL:AES80429.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 197597 | 203845 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000085s00008870.1 | PF02450.10 | LCAT | 64 | 148 | 0.00027 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.924 |
| SRR1783600 | control | 17.813 |
| SRR1783602 | moderate drought stress | 19.467 |
| SRR1811619 | moderate drought stress | 19.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.317 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 37.327 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.685 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.536 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.007 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.571 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.256 |
| SRR2868004 | Drought Stress (root) | 22.658 |
| SRR2967015 | Control (root) | 28.583 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.661 |
| SRR9715740 | Leaf | 16.432 |
| SRR9715741 | Leaf | 16.917 |
| SRR9715739 | Root | 9.024 |
| SRR9715742 | Root | 30.765 |
| SRR9715743 | Root | 27.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.279 |
| SRR8749028 | MeJA induced 9h | 8.157 |
| SRR8749029 | MeJA induced 9h | 8.228 |
| SRR8749030 | Uninduced | 4.073 |
| SRR8749031 | Uninduced | 0.787 |
| SRR8749032 | Uninduced | 2.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 89.392 |
| SRR8400027 | Control - Root | 151.224 |