Gene detail information of Glyur000085s00008866 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65470.2 | 2.00E-161 | chromatin assembly factor-1 (FASCIATA1) (FAS1) |
| NR | XP_004492868.1 | 0 | PREDICTED: chromatin assembly factor 1 subunit FAS1-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9SXY0|FAS1_ARATH | 0 | Chromatin assembly factor 1 subunit FAS1 |
| trEMBL | tr|I1N414|I1N414_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G48000.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 167825 | 173094 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000085s00008866.1 | PF12253.3 | CAF1A | 495 | 567 | 3.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.176 |
| SRR1783600 | control | 7.166 |
| SRR1783602 | moderate drought stress | 3.004 |
| SRR1811619 | moderate drought stress | 2.900 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.102 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.887 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.003 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.866 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.232 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.790 |
| SRR2868004 | Drought Stress (root) | 7.225 |
| SRR2967015 | Control (root) | 8.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.640 |
| SRR9715740 | Leaf | 1.097 |
| SRR9715741 | Leaf | 1.489 |
| SRR9715739 | Root | 0.945 |
| SRR9715742 | Root | 2.546 |
| SRR9715743 | Root | 2.416 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 31.662 |
| SRR8749028 | MeJA induced 9h | 16.697 |
| SRR8749029 | MeJA induced 9h | 13.605 |
| SRR8749030 | Uninduced | 1.463 |
| SRR8749031 | Uninduced | 1.749 |
| SRR8749032 | Uninduced | 1.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.839 |
| SRR8400027 | Control - Root | 11.270 |