Gene detail information of Glyur000085s00008860 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G65540.1 | 0 | LETM1-like protein |
| NR | XP_003551694.1 | 0 | PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial-like [Glycine max] |
| trEMBL | tr|K7MUI2|K7MUI2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G48050.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 130805 | 143511 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000085s00008860.1 | PF07766.8 | LETM1 | 210 | 495 | 1.70E-95 |
| Glyur000085s00008860.2 | PF07766.8 | LETM1 | 210 | 495 | 1.70E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.586 |
| SRR1783600 | control | 7.616 |
| SRR1783602 | moderate drought stress | 7.828 |
| SRR1811619 | moderate drought stress | 7.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.219 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.036 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.622 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.281 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.141 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.985 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.705 |
| SRR2868004 | Drought Stress (root) | 15.261 |
| SRR2967015 | Control (root) | 14.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.415 |
| SRR9715740 | Leaf | 7.167 |
| SRR9715741 | Leaf | 8.483 |
| SRR9715739 | Root | 0.802 |
| SRR9715742 | Root | 8.031 |
| SRR9715743 | Root | 7.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.366 |
| SRR8749028 | MeJA induced 9h | 7.861 |
| SRR8749029 | MeJA induced 9h | 5.555 |
| SRR8749030 | Uninduced | 4.977 |
| SRR8749031 | Uninduced | 3.853 |
| SRR8749032 | Uninduced | 3.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.728 |
| SRR8400027 | Control - Root | 20.720 |