Gene detail information of Glyur000085s00008849 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10040.1 | 4.00E-58 | cytochrome c-2 |
| NR | NP_001267985.1 | 8.12E-76 | uncharacterized protein LOC100243029 [Vitis vinifera] |
| COG | YP_001831159.1 | 2.00E-30 | cytochrome c class I [Beijerinckia indica subsp. indica ATCC 9039] |
| Swissprot | tr|Q0DI31|CYC_ORYSJ | 4.00E-75 | Cytochrome c |
| trEMBL | tr|B2LXS2|B2LXS2_VITVI | 3.00E-76 | Mitochondrial cytochrome c {ECO:0000313|EMBL:ACC61674.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 80233 | 82112 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000085s00008849.1 | PF00034.16 | Cytochrom_C | 13 | 109 | 9.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 97.693 |
| SRR1783600 | control | 98.058 |
| SRR1783602 | moderate drought stress | 85.069 |
| SRR1811619 | moderate drought stress | 84.565 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 126.865 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 126.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 95.574 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 92.165 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 77.934 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 76.783 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.638 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.460 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 253.750 |
| SRR2868004 | Drought Stress (root) | 155.943 |
| SRR2967015 | Control (root) | 133.537 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 170.286 |
| SRR9715740 | Leaf | 143.187 |
| SRR9715741 | Leaf | 164.274 |
| SRR9715739 | Root | 173.356 |
| SRR9715742 | Root | 113.849 |
| SRR9715743 | Root | 123.606 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 136.687 |
| SRR8749028 | MeJA induced 9h | 60.566 |
| SRR8749029 | MeJA induced 9h | 122.963 |
| SRR8749030 | Uninduced | 88.935 |
| SRR8749031 | Uninduced | 62.528 |
| SRR8749032 | Uninduced | 132.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 164.515 |
| SRR8400027 | Control - Root | 153.362 |