Gene detail information of Glyur000085s00008840 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25480.1 | 1.00E-67 | Rhodanese/Cell cycle control phosphatase superfamily protein |
| NR | ABN08992.1 | 5.37E-164 | Rhodanese-like [Medicago truncatula] |
| Swissprot | tr|Q56XR7|STR4A_ARATH | 3.00E-82 | Rhodanese-like domain-containing protein 4A, chloroplastic (Precursor) |
| trEMBL | tr|A2Q5X2|A2Q5X2_MEDTR | 2.00E-164 | Rhodanese-like {ECO:0000313|EMBL:ABN08992.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00085 | 48661 | 50814 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.337 |
| SRR1783600 | control | 8.263 |
| SRR1783602 | moderate drought stress | 4.458 |
| SRR1811619 | moderate drought stress | 4.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.432 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.318 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.935 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.630 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.480 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.349 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.143 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.376 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.285 |
| SRR2868004 | Drought Stress (root) | 3.923 |
| SRR2967015 | Control (root) | 5.169 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.268 |
| SRR9715740 | Leaf | 14.240 |
| SRR9715741 | Leaf | 8.201 |
| SRR9715739 | Root | 1.332 |
| SRR9715742 | Root | 2.661 |
| SRR9715743 | Root | 2.564 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.122 |
| SRR8749028 | MeJA induced 9h | 3.561 |
| SRR8749029 | MeJA induced 9h | 3.427 |
| SRR8749030 | Uninduced | 0.749 |
| SRR8749031 | Uninduced | 0.090 |
| SRR8749032 | Uninduced | 0.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.193 |
| SRR8400027 | Control - Root | 9.056 |