Gene detail

Gene detail information of Glyur000085s00008839

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G25500.1	formin homology 1
NR	XP_004492891.1	PREDICTED: formin-like protein 1-like [Cicer arietinum]
Swissprot	tr\|Q9SE97\|FH1_ARATH	Formin-like protein 1 (Precursor)
trEMBL	tr\|A2Q5W8\|A2Q5W8_MEDTR	Formin-like protein {ECO:0000256\|RuleBase:RU361260}

Sequence

Transcript Sequence

>Glyur000085s00008839.1
TAGAATCTTAGCTGGATGCAAACACTCCCTAAATTTCTCTCTCCCTTTTCATATCATCATAAATTCAACCTTTCCACACACACACCCCCCCTCTTCCTTCTCTNCCTCTGTTGTTTGTGTCACTCCCTCACTCCTCGCTCACCCTCTGTCGCAAAAATCTTCTTCCATTACTACTTCTCCCATTCTCTGTGAAACCCTCATACATTCACTTCACACAACAACAACATCAACATGCAGACCCTCTTCTTGTCCTTTTTGTTTATCTTCTTCTCATGTGCACCTCAGCAACTAGCCTTCTCCAAAACCTTCCCCTTACACTTTCACACTCCCAACAACAACAACAACAACAACAACAGAAGGATCCTCCATGAACCCTTTGGGCCATTGAACACCCTCCCTCCATCTGAACCAACAAAGCCACCACCACCCCATTCTTCTCCCACTTCAACCCAAAACCCAAAGCACCCATTTTCAACCACCACCACCACCCCCACCACTACCACACCACCCATCACCACCAACAACCAAGACCAATCACCATTTTTCCCAAACTACCCTCCATCCCCTCCCCCTCCTTCCCCAATTACCTTTGCTTCTTTCCCAGCCAACATCTCCTCTCTCATCCTCCCTCACACTCCCCAACCCAACAACCCCTCTTCCAACAAACTCCTCCCCCTCGCCCTCTCATTCTCCGCAGTCGCTGCCCTCGCCGTCGCCGTCTCCACCTTCTTCTACTGCCGCCGGCGCCTCCGGAACCGCCGTGCCGGCGCCGACGACAAGGCCTCCGGATCCGACAGCAGCCCCGGGCTGTTCCAGCGCAATGCCGTAACCACCGCTGCCGCCGTTTCCTCCGGCAACGGCGGCTCCGAGCTTCTGTATCTCGGCACTGTCATCGACTCGCACCGAATCGACGGCGGCGCTTCCACGAACCGGAAGCTGGAATCGCCGGAGCTCCGGCCGCTCCCGCCACTCGCGCGGTTTCCGGAACCTCCGCCGCCTCCTCCTCCTCCGCTTGGCGACACGTGCTCGGAGGAGGAAGAGGAGGAGTTTTACTCGCCGAGGGGTTCGTCCTTGGGAGGCCACGAGAGCTCCGTCGGAACCGGATCGGGTTCCCGGAGAGTGTTCTCCGCCATTNCCGCCGGTAGTCTTGCCGGAAGAAGCGGCGAGTCGAGCTCCAATTCCTGCTCTTCTTCCTCTTTCGGTTCTCCCAACAGGTCAAACTCGATCAGCCTCTCACCGCCGGCGAGTTCAAGTCCCCGGAGAACACAACCGAAATCACCGGAAAACACAACCATAGTCTCGTCACCAATTCACAACCAACACGCTCAATCCTCTTCTTCTTCGTTCTCCTCATCGCGCTCAACACCAGAGAGAGCTTTTGATGAAGAAAATGACACTCACTCACTTTCACTCTCTCTGGAGAATAACCCAAATGGGGCATTGAGTGCATGCACAAATGCACATGCATCATCATCACCATCACCAACATCATCATCGTCATCATCATCACAAGAGAGAGTTTTGGAGAAAAATGAAAATGCTTCATCACCAGCAACACAACCACCAAGGCTATCATCAGTATCTTCATCTTCAGCTTTTTCTCTTCCCTCTTCCCCGGAGAAGATGTTGCATCATCATCATTACCATCATCATCAAGGTTTCGAATTTGATCAGTCTCCGAGAATGTCAAGTGTCTCTGAGAGTCTAAAGCTACCGGGTCTGTCATCACTGCCTCTGTCACCAACCCTGCTTTCATCACCCGAAACAGAAAGAGGGTTTTTAGCAACAGTTTCCAATGCTGTGCCTGTGCCACAGAGAAAACACTGGGATATTCCTGTTTTGGATCAAATTACAGTAGTGCCACAGAGGAAACATTGGGAGATTCCACTTCTCTCTAAGCCCATTGCTCCGTCACCACCGCCTCCGCCGCCAATGCCCCAGCGGCAGAGGAGACATTGGGAAATGCCGGCTCCCTCCACACCGGTTGTCGGTCAACCGGTTTTGGGGCCGCCGGAGTTAGTACCTCCTTCGAGGCCTTTTGTGTTGCAGAACACAACAGCAACAAATGCTGAGGAAATTGAAGAGACCTTGAAACCGAAATTGAAGGCCCTGCATTGGGACAAAGTGAGAGCAACCTCTGATCGTGAAATGGTTTGGGATCAGTTGAAGTCTAGTTCCTTTAAATTGAATGAAGAAATGATTGAGACATTGTTTGTAGTGAATGCACCAAACCAAAAACCCAAGGATGCTACTGCACGCTCTGCTCTTCCCCTGCCACATCAGGAGGACAGAGTCCTTGATCCCAAAAAGTCTCAAAACATTGCAATCTTGCTCAAAGCTCTTAATGTCACTATAGAAGAAGTGTCTGAAGCACTTTTAGAAGGTAATGCTGATACACTTGGAACAGAACTACTTGAAAGCTTGTTAAAAATGGCACCAAGCAAGGAAGAAGAACGTAAATTGAAGGAACACAAAGATGACTCACCAACCAAGCTTGATTTGGCTGAGAGATTTTTGAAGGCAGTGCTTGATATACCTTTTGCATTTAAAAGGGTTGAAACAATGCTTTACATGGTCAATTTTGAATCTGAAGTGAAGTATCTTAGAAAATCCTTTCAAACTCTAGAGGCAGCCTGTGAGGAGCTGCGAAATTGTAGAATGTTCTTGAAGCTTCTAGAGGCTGTACTTAAAACCGGGAACCGCATGAATGTGGGGACAAACCGGGGTGATGCAGAGGCCTTCAAACTTGATACGCTTCTCAAGCTGGCCGATGTCAAAGGCGCAGATGGGAAAACCACTCTACTGCATTTTGTGGTACAAGAAATTATTAGAACCGAAGGTGCTCGTGTCTCCGGTACTAACCAAACCACAAGCTCTACCTTGACCGAAGATGCCAAGTGTAGGAGGCTTGGCCTTCAAGTCGTATCCAGTCTAAGCTCAGAGCTAGCAAATGTGAAGAGGGCTGCTACTATGGATTCCGAAGTTCTCAGCAGCGATGTCTTTAAACTTTCCAAAGGAATCGCAAACATCGCAGAGGTTGTTGTGCAATTAAACCAAATGGCGGGATCAGATGAAAGGAGTCAGAAATTCACTGAGTCAATGAACAGATTCATTAGAATGGCTAAGGAGGAAATTCTAAAAATTCAAGCCCAAGAAAGTGTTGCATTGTCTCTTGTGAAGGAGATCACAGAGTATTTTCATGGGAACTTGGTAAAGGAAGAAGCTCATCCATTCAGAATCTTCATGGTTGTAAGGGATTTCTTAGCAGTCCTTGACAGGGTCTGCAAGGAAGTCGGTATGATAAATGAGCGAACCATGGTTAGTTCGGCCCACAGATTCCCCATTCCGGTTAATCCAATGCTTCCACAACCTCTTCCCGGATTACATGGAAGGCAACAACAGTGTAGTAATGTTTCAGATGATGAGAGTCCATCACCTTAGCTACTATATCACTCATGTAAGTGACTTCTTGGCTGCATCTTCTAAAGAACAACCTGGAATCAGGTGATTTTGACTTGTTGGATTTATGTGGTCTGGCCAATTTTTTTTTTTGTTACATTGTAAAAATCCTTGTCAAAGATTCCAGTTTATGTAGATTATATAGGGAAGAGGAGATAGTAGAAGATTTTCTTTGAGGGAAAATAATATATGTACTATACGGTTGTTATAGTTGCTTGTAAATAGAGCTTTTCAGTTAGAGAGAACCTTTGGTTTCAATTGGAATGACCCTACAATCAAACTTCAAAATGTTGCACAGCATTTTTCAGCTATAATGCTGTTTCTGTGTAAAAATCTAGTCTGAACTCTGAATTAAACTTAAGAGAAGTCTCGTGCATAATCTTCCCTGTAGGAGTAAGCAAATGCATATAGAGCTTACATGAAGTGAAAATGAGCTCTTCTCTATTTTAGGCTTGCTTTACCTTTTAATTTTTTTCTTCTGGATTTACAAAAAATATCGAGTTGATAAGCTCTAGTTTCTACTCAGATTTCATCTTATTGTTGTTTATTTTTTTAAATCATCTTATTGTTTAATGTATCAAAGCCTCATTCCATTCTCAGTGTAATTGATTTGTCATTTATTTATCCATTCTACATACTTCATACTTTTGTTTTGTTTTTGTTTTTTTTTTT

Protein Sequence

>Glyur000085s00008839.1
MQTLFLSFLFIFFSCAPQQLAFSKTFPLHFHTPNNNNNNNNRRILHEPFGPLNTLPPSEPTKPPPPHSSPTSTQNPKHPFSTTTTTPTTTTPPITTNNQDQSPFFPNYPPSPPPPSPITFASFPANISSLILPHTPQPNNPSSNKLLPLALSFSAVAALAVAVSTFFYCRRRLRNRRAGADDKASGSDSSPGLFQRNAVTTAAAVSSGNGGSELLYLGTVIDSHRIDGGASTNRKLESPELRPLPPLARFPEPPPPPPPPLGDTCSEEEEEEFYSPRGSSLGGHESSVGTGSGSRRVFSAIXAGSLAGRSGESSSNSCSSSSFGSPNRSNSISLSPPASSSPRRTQPKSPENTTIVSSPIHNQHAQSSSSSFSSSRSTPERAFDEENDTHSLSLSLENNPNGALSACTNAHASSSPSPTSSSSSSSQERVLEKNENASSPATQPPRLSSVSSSSAFSLPSSPEKMLHHHHYHHHQGFEFDQSPRMSSVSESLKLPGLSSLPLSPTLLSSPETERGFLATVSNAVPVPQRKHWDIPVLDQITVVPQRKHWEIPLLSKPIAPSPPPPPPMPQRQRRHWEMPAPSTPVVGQPVLGPPELVPPSRPFVLQNTTATNAEEIEETLKPKLKALHWDKVRATSDREMVWDQLKSSSFKLNEEMIETLFVVNAPNQKPKDATARSALPLPHQEDRVLDPKKSQNIAILLKALNVTIEEVSEALLEGNADTLGTELLESLLKMAPSKEEERKLKEHKDDSPTKLDLAERFLKAVLDIPFAFKRVETMLYMVNFESEVKYLRKSFQTLEAACEELRNCRMFLKLLEAVLKTGNRMNVGTNRGDAEAFKLDTLLKLADVKGADGKTTLLHFVVQEIIRTEGARVSGTNQTTSSTLTEDAKCRRLGLQVVSSLSSELANVKRAATMDSEVLSSDVFKLSKGIANIAEVVVQLNQMAGSDERSQKFTESMNRFIRMAKEEILKIQAQESVALSLVKEITEYFHGNLVKEEAHPFRIFMVVRDFLAVLDRVCKEVGMINERTMVSSAHRFPIPVNPMLPQPLPGLHGRQQQCSNVSDDESPSP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00085	37716	42827	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000085s00008839.1	PF02181.18	FH2	619	1014	4.00E-118

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	81.303
SRR1783600	control	82.287
SRR1783602	moderate drought stress	39.365
SRR1811619	moderate drought stress	39.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.993
DRR006520	Root Summer glycyrrhizin high producing strain	16.679
DRR006521	Root Winter glycyrrhizin high producing strain	0.054
DRR006522	Root Winter glycyrrhizin high producing strain	0.052
DRR006523	Root Summer glycyrrhizin low producing strain	10.518
DRR006524	Root Summer glycyrrhizin low producing strain	10.628
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.899
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.943

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.896
SRR2868004	Drought Stress (root)	9.190
SRR2967015	Control (root)	10.756

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.441
SRR9715740	Leaf	1.722
SRR9715741	Leaf	1.728
SRR9715739	Root	8.658
SRR9715742	Root	10.933
SRR9715743	Root	10.986

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.462
SRR8749028	MeJA induced 9h	3.156
SRR8749029	MeJA induced 9h	2.548
SRR8749030	Uninduced	0.139
SRR8749031	Uninduced	0.137
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.173
SRR8400027	Control - Root	35.976