Gene detail information of Glyur000084s00009539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18570.1 | 4.00E-29 | Oleosin family protein |
| NR | XP_003609083.1 | 3.83E-88 | Oleosin [Medicago truncatula] |
| Swissprot | tr|Q96543|OLE16_BROSE | 3.00E-26 | Oleosin 16 kDa |
| trEMBL | tr|G7JS16|G7JS16_MEDTR | 1.00E-88 | Oleosin {ECO:0000313|EMBL:AES91280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 366309 | 366803 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009539.1 | PF01277.12 | Oleosin | 38 | 150 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.317 |
| SRR1783600 | control | 18.063 |
| SRR1783602 | moderate drought stress | 22.503 |
| SRR1811619 | moderate drought stress | 22.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.343 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.385 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.996 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.247 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.490 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.451 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.744 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.256 |
| SRR2868004 | Drought Stress (root) | 12.105 |
| SRR2967015 | Control (root) | 7.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.884 |
| SRR9715740 | Leaf | 6.890 |
| SRR9715741 | Leaf | 8.000 |
| SRR9715739 | Root | 13.113 |
| SRR9715742 | Root | 13.109 |
| SRR9715743 | Root | 10.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.592 |
| SRR8749028 | MeJA induced 9h | 5.159 |
| SRR8749029 | MeJA induced 9h | 1.667 |
| SRR8749030 | Uninduced | 0.011 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.696 |
| SRR8400027 | Control - Root | 11.739 |