Gene detail

Gene detail information of Glyur000084s00009535

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G74070.1	2.00E-35	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
NR	XP_010532267.1	2.78E-69	PREDICTED: peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic [Tarenaya hassleriana]
COG	YP_008072931.1	7.00E-06	peptidyl-prolyl cis-trans isomerase [Erysipelothrix rhusiopathiae SY1027]
Swissprot	tr\|F4HTT6\|CP26B_ARATH	4.00E-49	Peptidyl-prolyl cis-trans isomerase CYP26-2, chloroplastic (Precursor)
trEMBL	tr\|V7CD25\|V7CD25_PHAVU	2.00E-65	Uncharacterized protein {ECO:0000313\|EMBL:ESW27155.1}

Sequence

Transcript Sequence

>Glyur000084s00009535.1
ATGCTACAAAACCCAAGAGTACTGCGATCTTCCCCTCAACCATTCAACCCTCCAACTCTTACGTCAGCACCATCCCCTTCATCATTCCAACTATTACCCACTACTACACCTACACCTTTTGCAACCCTCAAACAGCAATGCAGATTATCACGTAGAGAGCTCACAATCTACAGCAACTCTTGCTTGCTGCTACTTTTGGCAAGAGCAGAAGAAGAAGATGTTACCAACAGTGGAGAGAATTTGACTAACACTCCCAGCTGCACTGAAAGAAAACCCACCAAACAAGCCTTCTTTGACATATCCATTGATGGTGAACCTGTTGGTCGCATTACTATAGAACTCTATGGGGATGATGTCCCTGCAGGAAACTTGCTAACAGGACAGGGAGCATTTTGGTTGCTGAAACTCTTAGACCCATCAAAACCACCTCCCAAGATGAAACTGGTTGCAAGAAAAGGGAAGCTGGAGATTGATCAAGAAGAGGTTGGAAATGATCCCAATGGGACAGAATTTGTCATTGCCACAAAGGACTCACCAGAATTAGATGCATCTTCTCTGGTAATTGGAAGGGTAGTAGGAGGGATGGAGGTTGTGCAGAGGATTAGTCAGGTAAAAACTGTACAAGAGAATACGGGCTCTCCATATTTTAGGGTGGCAAAGCTAATAGGAGACAAGAGGGCTGTGGTAGCAGAAAGGGGATTCAACCGCCCTTATTCAAAAGTTATCGTTACAAACTGTGGTGTAATGGAGTAGCACAGAATTGTATTCACTCCCTTCCGTAGTTGAATTCCCGTGTAAGAGAATCAAATCACATCACATTCTATAACAATTTTTATTATCATTTAACTCTATGTAACGTCTGCCGCTTGAATTGCGAATGGGGAAAAAATATTACAGCTCATTTCCAAAAGGCAAAGTAACCGTGAATAACAGGAATCAAGGTGTAACAGATTAATTTCTTTTGTTAGGAGGGGGATTGATCCAAATATATCTCATCTGAAAAAACCAATTGAACTTTTGATACAAAAATTACAACTTACATGGTTTCAAATGGAATAACATGTCAATAAAAATGATAGTATACACGATAGTTCAAGGGTCCTTGCCCCCCATTTTTCTAAGCTACCCATGCTCTGCATTTTGACCCGATATGTGAGCGAGCTTCGTTCTTTTCGTAGGTGGAGACATGAAAAGCTTTCCAATTGAACCAACAGGGTCATCTACCTGCACACATACGGTATATGGTAAGATGGTGAAGGTCCTCAGACAATGATTCCACAAGCAATTGGACATAAACAGGTGTTCACAGACCACAAAAGGAACAGTTTGGGTCATTCCAAGCACTCTTGTCCATAATGTTGCTACCAATCAATTCACTAAGCTATATAATATTCCATCCAATGATAAGAGTAATAAGATCTGCAAGAAATACCTTAACAATGGGCATAGATGATGGAGATGTATTTGGTGAATGCGATAAATGTTTTTTCTGACGATGCAAAGCAGATAATGTTTGTTTCCACCCAGGCTCCCCATCATCTATCGATGCAATCCAGGGGCAGAAGTGTCTGTGCTGCCTGATTGGATCAAATTCCATTGCTTTATCAGACAGTGTTGAATTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	350675	352970	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0000413 protein peptidyl-prolyl isomerization

GO:0006457 protein folding

molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009535.1	PF00160.16	Pro_isomerase	151	208	4.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.301
SRR1783600	control	1.361
SRR1783602	moderate drought stress	0.963
SRR1811619	moderate drought stress	0.937

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.822
DRR006520	Root Summer glycyrrhizin high producing strain	0.767
DRR006521	Root Winter glycyrrhizin high producing strain	1.851
DRR006522	Root Winter glycyrrhizin high producing strain	1.567
DRR006523	Root Summer glycyrrhizin low producing strain	1.663
DRR006524	Root Summer glycyrrhizin low producing strain	1.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.964
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.262
SRR2868004	Drought Stress (root)	0.841
SRR2967015	Control (root)	0.713

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.861
SRR9715740	Leaf	19.800
SRR9715741	Leaf	9.887
SRR9715739	Root	0.198
SRR9715742	Root	0.201
SRR9715743	Root	0.333

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.396
SRR8749028	MeJA induced 9h	0.513
SRR8749029	MeJA induced 9h	1.612
SRR8749030	Uninduced	0.884
SRR8749031	Uninduced	0.846
SRR8749032	Uninduced	0.422

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.766
SRR8400027	Control - Root	0.902