Gene detail information of Glyur000084s00009526 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23100.1 | 9.00E-76 | Protein of unknown function, DUF617 |
| NR | XP_003549815.1 | 8.10E-149 | PREDICTED: protein MIZU-KUSSEI 1-like [Glycine max] |
| Swissprot | tr|O22227|MIZ1_ARATH | 8.00E-57 | Protein MIZU-KUSSEI 1 |
| trEMBL | tr|I1MUI0|I1MUI0_SOYBN | 3.00E-149 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA17G13250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 315253 | 316086 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009526.1 | PF04759.8 | DUF617 | 105 | 277 | 2.50E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.148 |
| SRR1783600 | control | 3.210 |
| SRR1783602 | moderate drought stress | 9.112 |
| SRR1811619 | moderate drought stress | 8.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.475 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 23.344 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.242 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.906 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.291 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.033 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.994 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 13.867 |
| SRR2868004 | Drought Stress (root) | 12.090 |
| SRR2967015 | Control (root) | 11.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.287 |
| SRR9715740 | Leaf | 1.166 |
| SRR9715741 | Leaf | 2.232 |
| SRR9715739 | Root | 4.641 |
| SRR9715742 | Root | 4.689 |
| SRR9715743 | Root | 5.334 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.660 |
| SRR8749028 | MeJA induced 9h | 2.116 |
| SRR8749029 | MeJA induced 9h | 1.464 |
| SRR8749030 | Uninduced | 0.391 |
| SRR8749031 | Uninduced | 0.145 |
| SRR8749032 | Uninduced | 0.737 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.080 |
| SRR8400027 | Control - Root | 9.510 |