Gene detail information of Glyur000084s00009521 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18530.1 | 2.00E-46 | EF hand calcium-binding protein family |
| NR | XP_003525634.1 | 1.32E-92 | PREDICTED: probable calcium-binding protein CML15-like [Glycine max] |
| COG | YP_007118813.1 | 9.00E-19 | putative signal transduction protein with EFhand domain [Oscillatoria nigro-viridis PCC 7112] |
| Swissprot | tr|Q9FZ75|CML15_ARATH | 5.00E-80 | Probable calcium-binding protein CML15 |
| trEMBL | tr|I1K183|I1K183_SOYBN | 5.00E-93 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G07720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 285472 | 285978 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009521.1 | PF13499.1 | EF-hand_7 | 12 | 70 | 5.00E-10 |
| Glyur000084s00009521.1 | PF13499.1 | EF-hand_7 | 98 | 155 | 7.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.075 |
| SRR1811619 | moderate drought stress | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.094 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.273 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.307 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.309 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.116 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.715 |
| SRR2868004 | Drought Stress (root) | 6.995 |
| SRR2967015 | Control (root) | 8.686 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 25.127 |
| SRR9715740 | Leaf | 22.841 |
| SRR9715741 | Leaf | 10.900 |
| SRR9715739 | Root | 6.496 |
| SRR9715742 | Root | 1.476 |
| SRR9715743 | Root | 1.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.771 |
| SRR8749028 | MeJA induced 9h | 28.608 |
| SRR8749029 | MeJA induced 9h | 27.440 |
| SRR8749030 | Uninduced | 16.740 |
| SRR8749031 | Uninduced | 13.050 |
| SRR8749032 | Uninduced | 11.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.663 |
| SRR8400027 | Control - Root | 1.175 |