Gene detail

Gene detail information of Glyur000084s00009510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G35520.1	3.00E-37	minichromosome instability 12 (mis12)-like
NR	XP_004508604.1	5.79E-100	PREDICTED: uncharacterized protein LOC101488808 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7JT53\|G7JT53_MEDTR	3.00E-90	Kinetochore-like protein {ECO:0000313\|EMBL:AES91375.1}

Sequence

Transcript Sequence

>Glyur000084s00009510.1
ATGAAATGTGACATATTGGGTGCAAAGCGCGTTTTATTGATTTTGTAATTGGGGGCAGAGAGAAGAGAAAGGGAGAATTGGCGGGAATGGAAGGGAGCGAGAGCGAGGCGGTTTTCGATTCGCTGAATCTGAATCCACAGCTCTTCCTCAACGAAGTTCTCAACACCGTCGACGATTTGCTCCTCCAAACCTTCGATTTCTTTTACCAGGAAGCATCCACCAAGATCAACTCCCAAAAGTCCCAAGATCTAAGACAGGCTGTGGATTCCACTCGCCACAAGGTTCAATCTGTTTTGGATCAAAAGCTCGCTGTCTGGGAAAAATACTGCCTTCGTCACTGTTTCACTCTTCCCCAAGGTTTTCACATGCCTAACAAAAACACTGTGGGGCAAGAGTCTGAAATGCTGAATCGAGAAGTTCAAGCCTTAGAGAGGCAGTCTACTCTTGATGCTCGGTGTATCGACGAGGCAGTACAATTATATGACCAAAACTCTTCTTACCATGAGTTGTTTCAGGAGATTATGACAACCGCCTCAGAACTTCGAATGAAGATGGGAAAGCTAAACCCCAACATGATTGAAGAGACCGAACAAATGAAAGCAAAAAGGATCTACAGCGCTGAAATGGATCTTTCTATAAATCCTGCCAAAGGCCTCTCAAATGTGCAATTAGAAGATCTTCAAGAATTTGTAACTCATATGAAGAGTAAGTGAACTTGTGTATTTTTTCATCAATCTAGTTGGACTGGACTTATACTTGTTATTCCTGTTATCGTTTATTCTTAGTCTGTCTCTGTGATTAGTTAGAATTTGCCTCTATGATGCTGAAATTATTGTGGGCAATTCCATGATTTCCTGCAAATTTAATTACAAAACTGAATTTGCGNGATTCAATTATAGTGTCAATGTATTGAAAGTGTTGTGTTAATTCCTAAATGAGTCTATGAAGAAAACTAGATTACTGCATAACTTTCTGTTTCACTAGAAAGTATAACATCAGTAAGGAGCAGATTTCATTCAGGAATCTGAATTAACCTGCCTAGAAGACAAATTGACCTGGCTGATCAGTTCCATTGCTCGATTCATTGTATAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	254478	256623	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007049 cell cycle

GO:0007067 mitotic nuclear division

cellular_component

GO:0000775 chromosome, centromeric region

GO:0005634 nucleus

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009510.1	PF05859.7	Mis12	9	141	3.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.470
SRR1783600	control	7.933
SRR1783602	moderate drought stress	9.499
SRR1811619	moderate drought stress	8.923

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.602
DRR006520	Root Summer glycyrrhizin high producing strain	7.557
DRR006521	Root Winter glycyrrhizin high producing strain	12.905
DRR006522	Root Winter glycyrrhizin high producing strain	12.615
DRR006523	Root Summer glycyrrhizin low producing strain	14.054
DRR006524	Root Summer glycyrrhizin low producing strain	15.117
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.880
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.578

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.547
SRR2868004	Drought Stress (root)	18.939
SRR2967015	Control (root)	20.945

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.408
SRR9715740	Leaf	3.696
SRR9715741	Leaf	4.438
SRR9715739	Root	6.980
SRR9715742	Root	4.337
SRR9715743	Root	4.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.306
SRR8749028	MeJA induced 9h	14.422
SRR8749029	MeJA induced 9h	16.476
SRR8749030	Uninduced	8.089
SRR8749031	Uninduced	4.138
SRR8749032	Uninduced	4.892

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.070
SRR8400027	Control - Root	21.539