Gene detail

Gene detail information of Glyur000084s00009508.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72550.1	0	tRNA synthetase beta subunit family protein
NR	XP_003609165.1	0	hypothetical protein MTR_4g112680 [Medicago truncatula]
COG	NP_578719.1	1.00E-82	phenylalanyl-tRNA synthetase subunit beta [Pyrococcus furiosus DSM 3638]
Swissprot	tr\|Q9SGE9\|SYFB_ARATH	0	Probable phenylalanine--tRNA ligase beta subunit
trEMBL	tr\|G7JT40\|G7JT40_MEDTR	0	Phenylalanyl-tRNA synthetase beta chain {ECO:0000313\|EMBL:AES91362.2}

Sequence

Transcript Sequence

>Glyur000084s00009508.1
GGAAGAGCTGTTTCTTCGTCGTGGTTGCAGTCACTCACTACCCGATCAGAAGAGCAGCATGCCGACCGTCAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTCGAAGACCTATGCTTCAGTTTTGGGATCGAGCTCGACGACGTTACCACAGAAAAGGCAATTGTGAGAAAAGAGAAGCATTTGGAAGAAGAAGCTGATGATGATGAAGAAGTTATCTACAAAATTGAAGTTCCCGCTAACAGATATGACCTACTCTGCCTCGAAGGACTTGCTCAATCCCTCCGCGTTTTCTGTGGGTTCCAGGAGATCCCCACTTACAAATTGGCTGACATCAGTAAGAAGGCAATGCTCAAAATGCATGTGAAACCAGAGACATCCCTGATTCGGCCATATGTTGTATGTGCCGTATTAAGAGGTTTAACNTTTGATAAAGTAAGATACAACAGCTTTATTGATCTCCAAGACAAGCTTCACCAAAATATTTGTCGGAGAAGAACCCTTGTTGCCATTGGCACTCATGATCTGGATAAATTGGAGGGCCCTTTCACCTATGAGGCTTTACCACCTTCAAGTATTAACTTTACGCCACTAAAGCAGGAAAGGAGCTTCAGGGCTGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCTTACATATAATTGAGGACTCTCCTGTTTTTCCTGTTNTGTATGACAGTAAGAGAACTGTTTTATCATTACCCCCTATTATCAATGGTGCACATTCGGCCATCACTCTGGAGACAAAGAACGTATTTATTGAATGCACTGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTAACAGCCTTCTCGGAATATTGTGAAAATAAGTTTGTTATTGAACCAGTTGAAGTGATTTCTGCTGATGGAAGATCTGAAATATATCCTGATTTATCTGTCTACAATATGGAAGTTTCTCTATCTTACATTAATGGGTTGATTGGAGTATCATTGGAGGCAGAAGAGGTCACCAGTTTCTTAAATCGGATGCAATTGCATGCTAAGCAATCCACATCTGGTAATAAGCNGTGCAACTTTATTGTATCTGTACCTCCTACTAGAAGTGATGTTCTTCACCCATGCGATGTTATGGAGGATGTTGCAATTGCTTATGGATTCAATGCTATTAAGGATAAAGCAATAGTAGATAATAAGGGCTCTAAGAGATTGGCTGCTTCCTTGACACTACTTCCTCTGAATGAGCTCAGCGATCTTATNAGAAAAGAGGTTGCAATGATTGGGTTCACCGAGGTCTTGACATTTATACTCTGCTCTAAAAAGGAAAACTTTGCCATGCTAAACCGCAAAGATGATAATTCCAAAGCGGTTATCATTGGAAACCCTAGGTCTTCAGACTTTGAGGCTGTTCGGACTAGTCTCATGCCTGGCATTTTGAAAACTGTTGCGCACAACAAAGATCACCCAAAGCCCATAAAGATTTTTGAAGTGGGTGATATAGCAATTTTGGATGACAAAAATGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCACTGTACTGTGGTGCTAATGCAGGATTTGAGATAATTCATGGCTTGGTGGACAGAGTAATGGAAAAAAATGGGATTACCTTTGTTTCAGCGGGTGATAAATCAGGGTATTATATTGAGCGGTCAGATGAGCCCGAATTTCTTGCTGGTAGACAAGCTAGAATCATTTACAAGGGAAAGCACATTGGCACTTTTGGCATTGTGCATCCAGAGGTTTTAAACAACTTCGACATTCCTGATCCCTGCTCCTTTGTTGAACTTAACATTGAAAGTAGGCATTGCCCCCTGGCTATTTTGACTATTTATTCCTTCAATCTGGGAATCAAGCTGTTCAACTGGGTGAGNGACAATTCAAGTGCCTTGAGCTTCATACTTGTTCTGGGAATTTAGAACCACACTAGCTGGGGAGCAGAATGTAACTAATATGCCCTAGATTAGGGTTTTGTTATTATTATTCAATTGTATCATTTTCTTTATTTAAGCTTTTCCATTTCGTGTTTTTAGCAAATCCGAAGCCATGAATTACCTGATAGGGAGATAATTTCTACCATGAATTATAGAACTATTGTTGAAAACAGTTGATTTTGGCCTTAAAACCAAGACAAGATATTGATACGTTTGAAAATTTTGCCAATACAGAATAGTAGTCAGAAGCGAAATAATAGTCTGCGCTAGTCTATCATCCTTGTTTAAGATTGTTGGACGCAATGTTATAAAACACGTATAGGNCAGTGATTACGAATTTACGGTTAAGGTACTGGGTCAATTGGTCAAACAGGGAGAAAATAGAGGTATTTGTGATCCTGATTTATGTCTAGTTGATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	244226	251511	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01890	FARSB, pheT	EC:6.1.1.20	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

biological_process
GO:0006432 phenylalanyl-tRNA aminoacylation

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0000166 nucleotide binding

GO:0000287 magnesium ion binding

GO:0003723 RNA binding

GO:0004826 phenylalanine-tRNA ligase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009508.1	PF03483.12	B3_4	119	280	1.20E-24
Glyur000084s00009508.1	PF03484.10	B5	306	378	1.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.609
SRR1783600	control	30.905
SRR1783602	moderate drought stress	28.667
SRR1811619	moderate drought stress	28.538

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.158
DRR006520	Root Summer glycyrrhizin high producing strain	33.851
DRR006521	Root Winter glycyrrhizin high producing strain	22.722
DRR006522	Root Winter glycyrrhizin high producing strain	22.144
DRR006523	Root Summer glycyrrhizin low producing strain	32.161
DRR006524	Root Summer glycyrrhizin low producing strain	32.151
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.144
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	60.178
SRR2868004	Drought Stress (root)	46.714
SRR2967015	Control (root)	44.280

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.622
SRR9715740	Leaf	29.304
SRR9715741	Leaf	29.846
SRR9715739	Root	11.890
SRR9715742	Root	28.866
SRR9715743	Root	27.694

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.645
SRR8749028	MeJA induced 9h	65.009
SRR8749029	MeJA induced 9h	35.703
SRR8749030	Uninduced	16.034
SRR8749031	Uninduced	10.331
SRR8749032	Uninduced	10.930

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	55.763
SRR8400027	Control - Root	47.503