Gene detail information of Glyur000084s00009507 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08180.2 | 1.00E-61 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein |
| NR | AFK48249.1 | 3.32E-103 | unknown [Lotus japonicus] |
| COG | NP_963606.1 | 5.00E-16 | 50S ribosomal protein L7Ae [Nanoarchaeum equitans Kin4-M] |
| Swissprot | tr|Q9LEY9|NHP2_ARATH | 8.00E-78 | H/ACA ribonucleoprotein complex subunit 2-like protein |
| trEMBL | tr|I3T6V7|I3T6V7_LOTJA | 1.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:AFK48249.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 242440 | 244052 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009507.1 | PF01248.21 | Ribosomal_L7Ae | 40 | 123 | 2.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 46.485 |
| SRR1783600 | control | 46.196 |
| SRR1783602 | moderate drought stress | 41.917 |
| SRR1811619 | moderate drought stress | 41.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 130.416 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 128.985 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 102.333 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 100.721 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 99.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 99.236 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 50.234 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 49.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 145.755 |
| SRR2868004 | Drought Stress (root) | 82.795 |
| SRR2967015 | Control (root) | 70.844 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.826 |
| SRR9715740 | Leaf | 56.875 |
| SRR9715741 | Leaf | 37.175 |
| SRR9715739 | Root | 35.796 |
| SRR9715742 | Root | 47.287 |
| SRR9715743 | Root | 39.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 244.183 |
| SRR8749028 | MeJA induced 9h | 99.086 |
| SRR8749029 | MeJA induced 9h | 179.163 |
| SRR8749030 | Uninduced | 18.331 |
| SRR8749031 | Uninduced | 12.480 |
| SRR8749032 | Uninduced | 21.263 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.602 |
| SRR8400027 | Control - Root | 88.290 |