Gene detail information of Glyur000084s00009506 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G73980.1 | 0 | Phosphoribulokinase / Uridine kinase family |
| NR | XP_003524499.1 | 0 | PREDICTED: uridine-cytidine kinase C-like isoform X1 [Glycine max] |
| COG | NP_293883.1 | 2.00E-26 | uridine kinase [Deinococcus radiodurans R1] |
| Swissprot | tr|Q9FKS0|UKL1_ARATH | 2.00E-17 | Putative uracil phosphoribosyltransferase (Precursor) |
| trEMBL | tr|I1MTB0|I1MTB0_SOYBN | 0 | Uridine kinase {ECO:0000256|RuleBase:RU003825} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 232849 | 241280 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009506.1 | PF00485.13 | PRK | 69 | 237 | 3.30E-24 |
| Glyur000084s00009506.1 | PF01928.16 | CYTH | 273 | 410 | 7.90E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.716 |
| SRR1783600 | control | 18.787 |
| SRR1783602 | moderate drought stress | 17.233 |
| SRR1811619 | moderate drought stress | 17.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.457 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.831 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.670 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.880 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.789 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.027 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.349 |
| SRR2868004 | Drought Stress (root) | 37.919 |
| SRR2967015 | Control (root) | 35.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 38.965 |
| SRR9715740 | Leaf | 46.311 |
| SRR9715741 | Leaf | 53.837 |
| SRR9715739 | Root | 7.018 |
| SRR9715742 | Root | 21.477 |
| SRR9715743 | Root | 19.768 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.885 |
| SRR8749028 | MeJA induced 9h | 15.570 |
| SRR8749029 | MeJA induced 9h | 7.777 |
| SRR8749030 | Uninduced | 12.110 |
| SRR8749031 | Uninduced | 9.474 |
| SRR8749032 | Uninduced | 8.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.892 |
| SRR8400027 | Control - Root | 31.947 |