Gene detail

Gene detail information of Glyur000084s00009504.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08170.1	2.00E-162	porphyromonas-type peptidyl-arginine deiminase family protein
NR	AES91372.2	0	porphyromonas-type peptidyl-arginine deiminase [Medicago truncatula]
COG	YP_001412422.1	2.00E-138	agmatine deiminase [Parvibaculum lavamentivorans DS-1]
Swissprot	tr\|Q8GWW7\|AGUA_ARATH	0	Agmatine deiminase
trEMBL	tr\|G7JT50\|G7JT50_MEDTR	0	Porphyromonas-type peptidyl-arginine deiminase {ECO:0000313\|EMBL:AES91372.2}

Sequence

Transcript Sequence

>Glyur000084s00009504.1
AAAAATAAAAATAAAAAAGAGGACCGCTGTTCCACTGTTTCCTTGAATTTAGTCCTTGTCCTCCCCCTCCTCAGTCAGGAGTTCGGCGTTGGAACCTATCTATCTTGCTTCGTAGGTTTTTCACACTTCGGAGGCCGCCAATTACGCGGAACGAGTGAAAAAGTACTGAAGCGTGAACATTGCGAGATGCAACTAGAAGATACGCCGACCGCTCTTGGATTTCACATGCCTGCGGAGTGGGAACCCCACTCACAGTGTTGGATGGGTTGGCCTGAACGCGTGGATAATTGGCGTGACGGTGCCGTTCATGCCCAACGTGTGTTTGCGCGGGCAGCGTCTGCGATCTCGAGATTTGAGAGAGTAACCGTTTGTGCTAGTTCCGCCCAGGTNGGTTGTTCATTGTTAGTTGTTAATTGGGAGAATGCACGGAATCAACTGCCGGATCATGTCAGGGTCGTTGAGATCAGCACCAATGATTCTTGGTTTCGTGACATTGGACCCACCTTTGTTGTGAGAAGAAAAGCATCAGAATCTGATGATGTAGAGCACAGGATTGCGGGGATTGACTGGGTTTTTAACAGCTGGGGAGGTTTAGAGGATGGATGTTACAGTGATTGGAGTCTCGACAGCCTTGCTGCTAAGAAGATTTTGGAAATTGAGAGGATTCCTAGATTTTCACATTCAATGGTGCTTGAAGGCGGAAGCATCCATGTGGATGGAGAAGGAACATGTCTTACCACCGAAGAGTGTCTCTTGAACAAGAACAGGAACCCACACTTCAGTAAGAACCAAATAGAGGATGAACTTAAGGCATATCTTGGAGTCAGGAAGGTTATATGGTTGCCTCGTGGATTATATGGAGATGATGATACAAATGGTCATATTGATAACATGTGCTGTTTTGTGAGGCCTGGTGTGGTTCTGCTGTCTTGGACTGGTGATAAAACTGATCCTCAGTATGAAAGATCTGTAGAAGCATATTCTTTGCTTTCAAGTGTAACTGATGCCAATGGTAGAAAATTTGAAATCATTAAACTCCATGTTCCCGGTCCACTATATATGACTGATAAAGAGGCTGCTGGGGTTTTACAGGATTCTGANGCCAAAGCAAGACTTTCAGGTACTAGGCTTGCTGCTTCCTATGTAAACTTCTACATTGCAAATGGAGCTATCATTGCTCCACAGTTTGGTGATAAAAAGTGGGATGATGAAGCTATCCGAGTCCTATCTAAGGCCTTCCCTCATCATGAAGTTGTGGGAATTGAAGGTTCCAGGGAGATTGTTTTGGCGGGTGGAAATATTCATTGCATTACTCAGCAACAACCAGCCATTTAGCGATACTCTCTCAATATACGTTTATAGGTGTTGTATTGGATTATGTTAATTAGGAGCCATTTAGCGATACTCTCTTAACATACGTTGATAGGTGTTGCATTGAATTGTGTTATTATTTATTAGGATGAATGATTAAGGACATGTTTGGGTTGCTGGTAGTTTCACCCAAACTCAGTTGGGAACCAAACATGCACTAAATTGCTTGGTTCGCTCCTATTGAAGAAGGATGCTAATATCCAAATACAATAGCTAGCATTAAAGTGTCTGCAAATAGATGGAAAACCATTGAAAATAAATCTATGCAGACTCTGTAACGTTGTTCTTTTTGTCGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	223377	228438	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K10536	aguA	EC:3.5.3.12	Arginine and proline metabolism	map00330

Gene Ontology

biological_process
GO:0009446 putrescine biosynthetic process

molecular_function

GO:0004668 protein-arginine deiminase activity

GO:0047632 agmatine deiminase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009504.1	PF04371.10	PAD_porph	74	442	3.10E-132

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.441
SRR1783600	control	6.344
SRR1783602	moderate drought stress	7.172
SRR1811619	moderate drought stress	7.168

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.872
DRR006520	Root Summer glycyrrhizin high producing strain	11.660
DRR006521	Root Winter glycyrrhizin high producing strain	12.834
DRR006522	Root Winter glycyrrhizin high producing strain	12.684
DRR006523	Root Summer glycyrrhizin low producing strain	14.715
DRR006524	Root Summer glycyrrhizin low producing strain	14.749
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.861
SRR2868004	Drought Stress (root)	14.883
SRR2967015	Control (root)	17.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	30.131
SRR9715740	Leaf	435.240
SRR9715741	Leaf	36.611
SRR9715739	Root	21.536
SRR9715742	Root	12.733
SRR9715743	Root	14.245

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.020
SRR8749028	MeJA induced 9h	7.420
SRR8749029	MeJA induced 9h	11.524
SRR8749030	Uninduced	2.738
SRR8749031	Uninduced	1.192
SRR8749032	Uninduced	1.991

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.887
SRR8400027	Control - Root	19.453