Gene detail

Gene detail information of Glyur000084s00009503.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G08160.1	1.00E-174	serine/threonine protein kinase 3
NR	XP_003609185.1	0	Serine/threonine protein kinase [Medicago truncatula]
COG	YP_003639563.1	2.00E-16	serine/threonine protein kinase [Thermincola potens JR]
Swissprot	tr\|Q683C9\|AUR2_ARATH	2.00E-14	Serine/threonine-protein kinase Aurora-2
trEMBL	tr\|G7JU40\|G7JU40_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES91382.1}

Sequence

Transcript Sequence

>Glyur000084s00009503.1
AAGAACGGAGTAAGCGAATAAATTAAAGGAAGTGAGGGAGGGTTGAAAGTTGAGACCAGAAATTCACAAATCTCGTTTTAACTCCCAACCGACGCGAAATCAGGTCTTCGGAAATCACCTTTTGGACACCTGATTTCAGTTCTTTATTTTTTCAACCATTCCCTTATTATTAATACTNCAACACCCACACAGTGAGCGGGGAGAGAGGGAGGACAGAAGAATAAGAACAAGAAAAATGGGTTGCTCATTCTCTGGTTTAAATGCACTGTACGACTCCGTGAACGGAGGAGGTGANGTGTGGATCAACGAGAACCGTTTCCGCATCGTGCGGCAGCTCGGAGAAGGTGGCTTCGCTTATGTCTACCTCGTTAAGGAGGTGCNCAACGACTCTGCTGCTGGTGGCCTCGGCAACAAGCTCAAAGACTCCTCTCATATCTCCGATGACGGAACTTATGCTATGAAAAAAGTGCTCATTCAGAACAATGAACAGCTGGAGTTGGTCAGGGAGGAGATCCGTGTTTCATCACTGTTTAATCACCCGAATCTCCTTCCGCTTCTTGATCATGCAATCATTGCTGTTAAGCCTACCCAAGAAACATCTTGGAACCATGAAGCATACTTGTTATTTCCAGTTCATTTGGATGGAACATTGCTAGACAATGCCAAAANAATGAAAGCCAAGAAGGAATTCTATTCTACCTCAGATGTTCTTCAAATATTTCGTCAGCTTTGTGCAGGACTAAAGCACATGCACAGTTTAGATCCTCCATATGCACATAATGATGTCAAACCTGGTAATGTTCTCATAACACATAGAAAAGGACAACCANCACTTGCCATTCTGATGGATTTTGGCAGTGCTCGTCCTGCAAGGAAGCAGATTAGCTCCAGATCAGAGGCACTCCAGTTGCAGGAATGGGCATCTGAACATTGCTCTGCTCCTTTCCGAGCCCCTGAGCTGTGGGATTGCCCAAGCCATACTGATATAGATGAGAGGACTGACATTTGGTCGCTAGGATGCACATTATATGCAATAATGTATGGGGTATCTCCGTTTGAATATGCACTTGGAGAGTCTGGTGGAAGCCTGCAATTNGCTATTGTAAATGCTCAGGTCAAATGGCCAGCTGGACCTAAACCGTCATATCCAGAAGCTCTTCNTCAGTTTGTGTCATGGATGCTTCAGCCCCAGGCTGCTATGCGGCCCCGGATAGACGATATCATTATCCATGTTGATAAGTTGATCACAAAGTTCTCTCATTGAGTTTACTATAGGGAACTGTGTGGCATGGTTACATATTGCAGTCATTAATTTAGAAAATTCGTGTGCATTTACTGTCCAGTTATATATCGATGGATCGAAAAGCAGTAGTTCCTTGCCTTGCGGAGTTAACCTTATATGTATCTTTTTCGTTTTTGGTGTTAGTCTAGGTAGTTGGGCGTTGGGTTTATTAAAAGTATTATNTCTGTCATTTTCACATAATTTTGTCTCTTGTAATTTATGAAATGGCCAATCTCCCTGTGGCTTCCTCAGAATTTATGCGCATAAATGGTTGTAGCCGGGTGGAAATCCATGCTTGAAGAAGCATGTATCCATAGTGTGAGTAGATCTACCAGACTACCACAATGAGTGCATTATTTTTTAGATGCAGGTTTGCCATTAAACTGCTCTGGGGCGGGTCGACCCTGCCTTTCTTCCCACCTTCAAATTCGAATGAAGTTACATATATCCCGTCAAAAAAGGAAAGTTACATATATAACTAGCAACTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	216416	221557	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:5.1.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009503.1	PF00069.20	Pkinase	28	332	2.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.818
SRR1783600	control	20.880
SRR1783602	moderate drought stress	14.020
SRR1811619	moderate drought stress	14.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.659
DRR006520	Root Summer glycyrrhizin high producing strain	20.439
DRR006521	Root Winter glycyrrhizin high producing strain	22.941
DRR006522	Root Winter glycyrrhizin high producing strain	22.137
DRR006523	Root Summer glycyrrhizin low producing strain	18.949
DRR006524	Root Summer glycyrrhizin low producing strain	18.598
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.460

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.737
SRR2868004	Drought Stress (root)	45.297
SRR2967015	Control (root)	38.962

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.848
SRR9715740	Leaf	20.762
SRR9715741	Leaf	26.864
SRR9715739	Root	28.857
SRR9715742	Root	34.152
SRR9715743	Root	33.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.149
SRR8749028	MeJA induced 9h	21.237
SRR8749029	MeJA induced 9h	14.840
SRR8749030	Uninduced	11.014
SRR8749031	Uninduced	5.830
SRR8749032	Uninduced	6.926

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	45.716
SRR8400027	Control - Root	46.298