Gene detail

Gene detail information of Glyur000084s00009498

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G73990.1	0	signal peptide peptidase
NR	XP_004508642.1	0	PREDICTED: protease 4-like [Cicer arietinum]
COG	YP_829050.1	1.00E-94	signal peptide peptidase SppA, 67K type [Candidatus Solibacter usitatus Ellin6076]
Swissprot	tr\|Q9C9C0\|SPPA1_ARATH	0	Serine protease SPPA, chloroplastic (Precursor)
trEMBL	tr\|I1MTA2\|I1MTA2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G09020.1}

Sequence

Transcript Sequence

>Glyur000084s00009498.1
ATGTTACGCACTCGCATTGNCATTCACCGCTTCTCCTACCGCATGTTACCGTCAATCCCACCACNATTCGCAATTAATCGCTTTCAACTCCAACGCCAACGCCGCTTCTCCCTCTTGTCTTTTCTCTCTCACACACCCCACCCCCCCAATCCCTTCTTCCCCTTTCATTTCCACTCTTCTTGTTGTTACTCCTCAATATCCTCCTCTTCCGCCCCTCAACAACAACAAGACTCGGTAGTAGTAGATGCCGATGACGATGACGACGATGATCCCACTGGTGANTTTAATTTTAAGCCCCTCACGCGCTGGAAAAAATTTACCCTCAAGCTCAGGTTGCTCACNGCGTTCCCCTGGGAGCGTGTTCAATACGGCACCGTCTTGAAAATCAACTTGCGCGGCCAGATATCCGATCAGCTGAAGAGTGTGTTCTACCGGGGATTATCTCTGCCCCGAATCTGCGATAATTTGTTGAAAGCAGCCTATGATCCTCGTATTTCTGGCCTCTATCTCCATATTGATATCTTAAATTGCGGCTGGGCTAAAGTCGAAGAAATTCGAAGGCACGTCTCGAATTTCAGAAAATCAGGAAAATTTGTTGTGGCTTATGTCACTTCATGTCGAGAAAAAGAATATTACATTGCATGTGCCTGTGAAGAGATATATGCCCCTCCAAGTGCTTTTTTTTCTTTGTTTGGATTGACTGTTCAAGCATCATTTCTCCGAGGTGTTTTAGACAACCTTGGAATTGAACCACAAGTGGAAAAGATCGGCAAATATAAAAGTGCAGGAGATCAACTAACCTCTAGAACCATGTCTGAAGATAATCGTGAGCAGCTGACTGCATTGCTGGATAAAATCTTTACAAATTGGCTGGATAAAGTCTCCTCTGCTAGAGGAAAGAAAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTCTATCAAGTAGACAGGCTGAAAGAAGAGGGCTTCATATCAAGCATAATCTATGATGACGAGGTTATCACTAGGTTGAGGGAGAGACTTCGAGTGAAACCAGATAAATATCTGCCAATGGTTAGTTTCAGGAAATCGACTGTTGGAATATCAGGTGGTAAAGAACTTATAGCCGTCATCCGAGCCTCAGGGAGCATTCGTCATGCTAAGAGTCAATCAAGTTCCCCTAGCTCAGGTATTGTTGGAGAGCAGTTCATGGAGAAGATCCGTAGTGTCAGAGGGTCAAACAAATACAAGGCNGTTATTATCCGAATTGACAGTCCAGGAGGTGATGCTCTTGCTTCTGATTTAATGTGGAGAGAAATCAGGCTTCTGGCTGCCTCAANACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCAGGAGCTATTGTTGCAGAAAGTCTTACCTTAACTGGCTCAATTGGAGTGGTCTCAGGAAAATTTAACCTTGGGAAACTTTATGAGAAGATTGGCTTCAGCAAAGAAATTATATCAAGGGGTAGATATGCTGAGCTCCTTGCAGCTGAACATCGTTCTTTTAGGCCAGATGAAGCAGAGCTATTTGCCAAGTCTGCAAAGCATGTTTATGAACAATTTCGGGATAAGGCAGCCCTTTCCAGATCAATGACTGTAGACAAGATGGAAGAGGTTGCACAGGGGAGGGTTTGGACNGGTAAGGACGCAGCATCTCATGGTTTGGTTGATGCTATTGGTGGGCTTTCTCGAGCTGTTGCTATAGCAAAATTGAAAGCCAATATACCTCAAGACAGACAGGTTACTGTTGTGGAGCTGACAAGATCCGGTCCTACTCTACCCGAGATTTTAGGCAGTCNAGGTATGGTTGGAGTGGACGAAACTATAAAGGAACTGCTACAGGACTTGACATTTTCTGATGGANTTCAGGCACGGATGGACGGAATCATGTTTCAGAAATTGGAAGGATATACACACCCCAACCCCATTTTGGCGTTGATCAAAGATTACCTCAGTTCTATTTAATTAGTTGTCTCGTACAGATTACCTCAGCATTTCTGGTTCCTACTTCCTTCTATTTGTGCTTTTTGTTGTTTAATAATCTACATGGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	190430	197551	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006465 signal peptide processing

GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0008233 peptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009498.1	PF01343.13	Peptidase_S49	192	344	9.60E-25
Glyur000084s00009498.1	PF01343.13	Peptidase_S49	437	587	6.30E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.956
SRR1783600	control	2.955
SRR1783602	moderate drought stress	4.426
SRR1811619	moderate drought stress	4.328

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.497
DRR006520	Root Summer glycyrrhizin high producing strain	2.503
DRR006521	Root Winter glycyrrhizin high producing strain	2.186
DRR006522	Root Winter glycyrrhizin high producing strain	2.149
DRR006523	Root Summer glycyrrhizin low producing strain	1.558
DRR006524	Root Summer glycyrrhizin low producing strain	1.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.484
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.585

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.955
SRR2868004	Drought Stress (root)	15.312
SRR2967015	Control (root)	13.025

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.661
SRR9715740	Leaf	18.367
SRR9715741	Leaf	10.530
SRR9715739	Root	1.289
SRR9715742	Root	1.351
SRR9715743	Root	1.089

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.732
SRR8749028	MeJA induced 9h	4.207
SRR8749029	MeJA induced 9h	2.529
SRR8749030	Uninduced	2.938
SRR8749031	Uninduced	2.246
SRR8749032	Uninduced	2.523

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.639
SRR8400027	Control - Root	8.047