Gene detail

Gene detail information of Glyur000084s00009491

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G02280.1	4.00E-74	SNARE-like superfamily protein
NR	KEH28203.1	1.70E-102	trafficking protein particle complex subunit-like protein [Medicago truncatula]
trEMBL	tr\|A0A072UGD7\|A0A072UGD7_MEDTR	6.00E-103	Trafficking protein particle complex subunit-like protein {ECO:0000313\|EMBL:KEH28203.1}

Sequence

Transcript Sequence

>Glyur000084s00009491.1
TTGGCCGCCGCCGCCGCCGCCGCTAGAGTCGCCGTCGACGTATCGATCCCCGTGTCCGTCTCACTGAAAATCGTGGCCTGTGACCCGAAATTGAACGTTGGCATCACCACTGTTCGCAGATTCACGAGCTCATCAGTTCGCAGAATCCCAAGCATTTTGGGTCGCCATTGTTCGCAGAAATCGCAAGCTTCCTTTGAACATCTTCAGGTGACTAAGAGTGTATTAATGGGTTCAAAGGTTAAGGATTTTCAGATTCTCGCAAAGGCTTTTGGAATGGCCGCGATTTACAGTCTTTACATCATCAATAAGTCTGGTGGATTGATCTACTATAAGGATTATGGGTCTGCCGGACGAATGGATACCAATGATAGCTTACGGGTGGCTAGCTTATGGCATTCAATGCATGCCATCTCTCAGCAGTTGTCACCTGTTTCAGGCTGTTCAGGAATTGAACTACTCCAAGCTGACACATTTGATCTTCATTGCTTCCAATCACTGACAGGGACAAAGTTTTTTGTGGTCTGTGAGCCTGGAACTCAACAAATGGAAAGTCTATTGAAATTCATATATGAATTGTACACGGATTATGTTCTGAAGAACCCTTTCTATGAGATGGAGATGCCTATACGATGTGAGCTCTTTGATATCAACCTAACTCAAGCAGTACAAAAGGATCGTGTTGCATTGTTGGGCCGATAAATCGCTATCGATCTGGCCAAGTTTTGTTTTTCAATGATATATTCTGTACACATTCCAAAAATTGTTATTGACTGTATTAGGTGCTGCTCTCTTTTCCTGTACCTNCCCTACGTATTTGCTTATAGAACAAATTTGTAAGATACCAATATGAGTTTCATCATTTCCTACCATCCTTTTTCTCATACAAATGAGGTATGTGTCTTATGTAGATTACTACTTACTTGGCCATATCTTCCTAATCCATGTTAATTATATAGACATGATGGTAATGTTACAATTACTTCTCAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	158674	161952	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006888 ER to Golgi vesicle-mediated transport

cellular_component
GO:0005801 cis-Golgi network

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009491.1	PF04099.7	Sybindin	95	224	2.60E-53
Glyur000084s00009491.2	PF04099.7	Sybindin	80	209	2.10E-53

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.957
SRR1783600	control	14.838
SRR1783602	moderate drought stress	11.037
SRR1811619	moderate drought stress	10.838

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.310
DRR006520	Root Summer glycyrrhizin high producing strain	21.169
DRR006521	Root Winter glycyrrhizin high producing strain	34.173
DRR006522	Root Winter glycyrrhizin high producing strain	33.477
DRR006523	Root Summer glycyrrhizin low producing strain	16.704
DRR006524	Root Summer glycyrrhizin low producing strain	16.616
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.205
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.013

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	36.906
SRR2868004	Drought Stress (root)	31.546
SRR2967015	Control (root)	29.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.842
SRR9715740	Leaf	15.551
SRR9715741	Leaf	20.035
SRR9715739	Root	16.166
SRR9715742	Root	16.701
SRR9715743	Root	19.072

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	80.526
SRR8749028	MeJA induced 9h	32.848
SRR8749029	MeJA induced 9h	77.671
SRR8749030	Uninduced	50.015
SRR8749031	Uninduced	73.455
SRR8749032	Uninduced	64.438

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.904
SRR8400027	Control - Root	28.841