Gene detail

Gene detail information of Glyur000084s00009476.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G58380.1	2.00E-171	SOS3-interacting protein 1
NR	KHN40977.1	0	CBL-interacting serine/threonine-protein kinase 10 [Glycine soja]
COG	YP_007468874.1	2.00E-34	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q9C562\|CIPKA_ARATH	0	CBL-interacting serine/threonine-protein kinase 10
trEMBL	tr\|I1JHK8\|I1JHK8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G40110.1}

Sequence

Transcript Sequence

>Glyur000084s00009476.1
TATAAAAGTATGAATACTAAGTAATANCTCTAATAATAGTTAATTAATATATTCAATTTCATCTCACAGTGCTGTATCAAATCTTCCCTTCATCTTCTCTGGGTTGGTGCATCTACAACACTCAAGACTAGACTCCAAGGAAAATCAACTTCCAAGATTTTCAGTATACTTCTGAGGTCTCCTATGGAGAATACAACAAAAGTCTTGATGCAAAGATATGAACTAGGAAGATTACTAGGCCAAGGCACATTTGGAAAGGTTTACTATGGAAGGAGTACAATAACTAACCAGAGTGTGGCTGTTAAAGTGACTGACAAGGATAAGGTTCTCAGAACTGGCCAAGCTGATAATATCAAAAGGGAAATATCTATTATGAGACTGGTAAAACACCCAAACATTATACAGCTTTTTGAGGTCATNGCCACAAGGGGTAAGATTTACTTTGTTATGGAATATGCTAAAGGTGGTGAGCTCTTCAAGAAGGTGGCCAAAGGGAAGCTCAAAGAAGATGTTGCACACAAGTATTTCAAGCAGCTAGTCAGTGCAGTGGATTTTTGTCACAGTAGAGGTGTATACCATAGAGACATAAAGCCAGAGAACATTCTGTTGGATGAGAATGAGAACCTGAAGGTCTCGGATTTCGGGCTAAGCGCCCTGGCCGAATCCAAACACCAGGATGGTTTGTTGCATACAACTTGTGGAACACCTGCCTATGTTGCTCCTGAGGTCATCAAAAGGAAGGGTTATGATGGTGCAAAAGCTGATATTTGGTCTTGTGGGGTGGTTCTTTTTGTCTTACTAGCAGGTTATATCCCTTTCCATGACTCAAATTTGATTGAGATGTATAGGAAGATAAGCAAAGCTGAGTTTAAATGTCCTAATTGGTTCCCAAGAGAAGTAAGGAAGCTATTGTGTAAGATGTTGGATCCANATCCTGACACTAGGATTTCCATAGCTAAGATTAAACAATCTTCTTGGTTTAAGAATGGACCAAATGGTAGACATAAAAAACAACAGGAAAGGGAAGACAACAAGACTGTTTCACTCTCTCCTGTGGCTACTAATCATTCTGATAATCAAAGGGAAGAAAGTGATGATGTTGTAGCAGCAGAAGAAGCAAGGCAAGAGTCAGTTGTTCCTGTAAGCATAAATGCCTTTGATATCATCTCCCTTTCACCTGGTTTTAACCTCTGTGGGTTCTTTGAGGACAGTTTTCAGAAAAGGGAAGCAAGGTTTACTTCAAGACAACCTGCATCAGCCATCATCTCAAGGCTNGAAGAGATAGCTAAGAGACTGAAGCTGAGAATAAAGAAAAGGGCTGCTGGTTTGTTGAAATTAGAGGGCCTTGATGAAGGTAGGAAAGGGGTTTTATCCATTGATGCTGAGATCTTTGAGGTTACCCCATTTTTCCATTTGGTGGAAGTGAAGAAATCAAATGGGGATACGCTGGAATATCAGAAAATATTGAATGAGGATGTTAGGCCTGCCCTTCAAGACATTGTTTGGGTTTGGCAAGGTGATCATCAACAAGAGCAGTCACAACAGTCACAGCAGCAACAACAATCACAGTCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00084	42689	45368	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000084s00009476.1	PF00069.20	Pkinase	12	266	1.50E-75
Glyur000084s00009476.1	PF03822.9	NAF	319	377	2.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.696
SRR1783600	control	4.775
SRR1783602	moderate drought stress	11.360
SRR1811619	moderate drought stress	10.765

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.137
DRR006520	Root Summer glycyrrhizin high producing strain	20.773
DRR006521	Root Winter glycyrrhizin high producing strain	10.326
DRR006522	Root Winter glycyrrhizin high producing strain	10.290
DRR006523	Root Summer glycyrrhizin low producing strain	19.335
DRR006524	Root Summer glycyrrhizin low producing strain	19.165
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.264
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.836

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.044
SRR2868004	Drought Stress (root)	4.912
SRR2967015	Control (root)	3.326

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.483
SRR9715740	Leaf	24.876
SRR9715741	Leaf	44.815
SRR9715739	Root	5.399
SRR9715742	Root	15.832
SRR9715743	Root	14.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.956
SRR8749028	MeJA induced 9h	15.642
SRR8749029	MeJA induced 9h	10.229
SRR8749030	Uninduced	11.292
SRR8749031	Uninduced	1.827
SRR8749032	Uninduced	4.372

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.496
SRR8400027	Control - Root	8.529