Gene detail information of Glyur000084s00009472 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30340.1 | 2.00E-51 | LOB domain-containing protein 13 |
| NR | XP_003544924.1 | 7.95E-97 | PREDICTED: LOB domain-containing protein 13-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9AT61|LBD13_ARATH | 4.00E-71 | LOB domain-containing protein 13 |
| trEMBL | tr|K7M865|K7M865_SOYBN | 3.00E-97 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G38280.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00084 | 14555 | 15355 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000084s00009472.1 | PF03195.9 | DUF260 | 21 | 120 | 4.30E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.781 |
| SRR1783600 | control | 9.502 |
| SRR1783602 | moderate drought stress | 3.868 |
| SRR1811619 | moderate drought stress | 3.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.730 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.684 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.474 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.488 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.101 |
| SRR2868004 | Drought Stress (root) | 11.830 |
| SRR2967015 | Control (root) | 31.110 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 7.391 |
| SRR9715742 | Root | 4.489 |
| SRR9715743 | Root | 4.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.387 |
| SRR8749028 | MeJA induced 9h | 6.711 |
| SRR8749029 | MeJA induced 9h | 9.428 |
| SRR8749030 | Uninduced | 7.923 |
| SRR8749031 | Uninduced | 9.865 |
| SRR8749032 | Uninduced | 11.337 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.611 |
| SRR8400027 | Control - Root | 27.226 |