Gene detail

Gene detail information of Glyur000083s00006999.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G27870.1	1.00E-69	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_006605257.1	0	PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Glycine max]
COG	YP_003997686.1	2.00E-41	pectinesterase [Leadbetterella byssophila DSM 17132]
Swissprot	tr\|Q3E8Z8\|PME28_ARATH	6.00E-81	Pectinesterase 28
trEMBL	tr\|I1NBN0\|I1NBN0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41350.1}

Sequence

Transcript Sequence

>Glyur000083s00006999.1
ATGAATTATCTGGGTCTTGGAAATAACGAAATGGATGATGAAGCAAAGGAGAGGGAGGAATTGGTCTTAAACATAGTGATCATGGCGGTCTCCATGATACTCATCGCATTGGTAACCATCGCTGTCGTGGCCAACGTAGACGGCTCCAAACACGGCGCTGGTACTATGAAGACCCTCCTCGAAGTTTGCAAGGAAACAGAGCATCCAGAAAGCTGTTTCCGTGTCTTGAAACCCGTAGGTGAAAGAGCCACAGTTTTAGATTTCGTGGGAGGTGCTATCAACGCAACCCTCAAGGAATTGGTGGTTGTGAACACACCAAAACCCGAACTTGAAAAGACCCTCACGCCCCTGCAGGCACAATCCTATAGGGATTGTTTGGAATTGCTGAATCTTGCNAAGGAAGAACTAGAGTCCTTGTATATGACGGCAACTACTTTTGCTGACTTCCCCAAAATAAACGTTGATGATATCGTCAACAGCTTAAGTGCTATCATTTCATACCAACAAACTTGCTCTAATGAATTGATGCGAACCAATAGCTATCAAATTTTGGGGTACTCAATGAAGATACCAATTCTTCTTGCAAGGATAACCTTAGCCATTGTCAACAATTTCTCTGACCAAGATTCCACTAATCGCGCCCTTGCCACTGCCAGCCAACATGATGNGGAAATCCCGGCGACACCGATCTCGGGGCGACAGCAGCACAAGCTGATGGAGGTTCGGAGAGATGGTGGTGGCCGGGGGCAGCAGCCAAATGCAGTTGTGGCTAAAGATGGGAGTGGACAATTCAGAACCATAGGTGAGTCATTCAGTGCATGTCCAAAGAATAACAAGGGGCAATGTGTTATTTACGTTAAGGAAGGTAAATATGAGGAGAGAGTGGTGATTCCTAAGGGTGTTGAACAAGTGCTCATGTATGGTGATGGGCCTATGAATACAATTGTCACTGGAATCAACATCACAAGAGACCCCAAGATGGTTACAACCTCCTATAGGGCAGCTACTTTTGTGGTAATGGGGAAAGGATTCGTGGGCAAAGATATGGGTTTCAGTGCCCCAGGTGGTATAACAGGAGCACCAGCACTGCTTGTCCTTGCTGATCATGCAGCATTCCTCAACTGCATAATNGATGGTGATGAAGGCACCCTGTATGCAGTGGCACAGCGCCAATTCTANAGAGACTGTGAGATTCATGGCAGTGTGAACATCATCATGGGAGACTCCTCAACTGTGATTCAGAACTCAAAGATCATTGTGAAGCCTCGGAATAATAATTCCTTTGATAATTTGAATCTAAGGAAAAACGTTGTGAGTGCTCAATCAAGGATAGACAAGTCTCAAGGAACTGGTCTTGTGATCCAAAACTGCACCATCACAGCACAAGGGGAAGGCAACAATACCCATCTTGCAGCTTCCACTTACTTGGGTACCCCTTGTAGTGAACAATCAAGAACAATCATAATGGAATCATATCTTGGTGATGTGATACATCCACAGGGTTGGTGTCAATGGAGTGATAATTATGGCATTGGAACAGCAACATTCAGAGAGTATAACAACAGAGGGCCAGGTGTAAAAATTGACAACAGGGTCAGTTGGGAAAGCTACAAAGATATTTCTAAGAGAAACAAAATGGAAGGTTTCACAGCTAAACAGTTTATCCAAGCAGACCGGTGGGTGCGACTTGCTGGCATTCCATACGAATCTGGGTTTGTTTACCTGTAATAGATAGGACCTTAGGATTCATTTGAACCAACCCTCATTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	335996	338192	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006999.1	PF04043.10	PMEI	58	176	1.10E-10
Glyur000083s00006999.1	PF01095.14	Pectinesterase	253	557	6.20E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.144
SRR1783600	control	0.153
SRR1783602	moderate drought stress	0.096
SRR1811619	moderate drought stress	0.085

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.194
DRR006520	Root Summer glycyrrhizin high producing strain	2.033
DRR006521	Root Winter glycyrrhizin high producing strain	0.126
DRR006522	Root Winter glycyrrhizin high producing strain	0.122
DRR006523	Root Summer glycyrrhizin low producing strain	0.062
DRR006524	Root Summer glycyrrhizin low producing strain	0.062
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.802
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.562

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.190
SRR2868004	Drought Stress (root)	0.235
SRR2967015	Control (root)	0.170

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.261
SRR9715740	Leaf	0.577
SRR9715741	Leaf	1.933
SRR9715739	Root	0.267
SRR9715742	Root	1.137
SRR9715743	Root	1.826

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.301
SRR8749028	MeJA induced 9h	0.800
SRR8749029	MeJA induced 9h	0.618
SRR8749030	Uninduced	0.449
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	0.350

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.459
SRR8400027	Control - Root	0.898