Gene detail

Gene detail information of Glyur000083s00006997.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G05610.1	3.00E-16	Plant invertase/pectin methylesterase inhibitor superfamily
NR	XP_004494513.1	7.66E-113	PREDICTED: putative pectinesterase/pectinesterase inhibitor 28-like [Cicer arietinum]
Swissprot	tr\|Q9FF78\|PME46_ARATH	1.00E-20	Pectinesterase 46
trEMBL	tr\|G7KWF3\|G7KWF3_MEDTR	1.00E-110	Pectinesterase/pectinesterase inhibitor {ECO:0000313\|EMBL:AES82365.1}

Sequence

Transcript Sequence

>Glyur000083s00006997.1
ATGAATTATCTGGGTCTTGGAAATAACGAAATGGATGATGAAGCAAAGGAGAGGGAGGAATTGGTCTTAAACATAGTGATCATGGCGGTCTCCATGATACTCATCGCATTGGTAACCATCGCTGTCGTGGCCAACGTAGACGGCTCCAAACACGGCGCTGGTACTATGAAGACCCTCCTCGAAGTTTGCAAGGAAACAGAGCATCCAGAAAGCTGTTTCCGTGTCTTGAAACCCGTAGGTGAAAGAGCCACAGTTTTAGATTTCGTGGGAGGTGCTATCAACGCAACCCTCAAGGAATTGGCACAATCCTATAGGGATTGTTTGGAATTGCTGAATCTTGCAAAGGAAGAACTAGAGTCCTTGTATATGACGGCAACTACTTTTGCTGACTTCCCCAAAATAAACGTTGATGATATCGTCAACAGCTTAAGTGCTATCATTTCATACCAACAAACTTGCTCTAATGAATTGATGCGAACCAATAGCTATCAAATTTTGGGGTACTCAATGAAGATACCAATTCTTCTTGCAAGGATAACCTTAGCCATTGTCAACAATTTCTCTGACCAAGATTCCACTAATCGCGCCCTTGCCACTGCCAGCCAACATGATGTGGAAATCCCGGCGACACCGATCTCGGGGCGACAGCAGCACAAGCTGATGGAGGTTCGGAGAGATGGTGGTGGCCGGGGGCAGCAGCCAAATGCAGTTGTGGCTAAAGATGGGAGTGGACAATTCAGAACCATAGGTGAGTCATTCAGTGCATGTCCAAAGAATAACAAGGGCAATGTGTTATTTACGTTAAGGAAGGAGAGAGTGGTGATTCCTAAGGGTGTTGAACAAGTGCTCATGTATGGTGATGGGCCTATGAATACAATTGTCACTGGAATCAACATCACAAGAGACCCCAAGATGGTTACAACCTCCTATAGGGCAGCTACTTTTGGATTCGTGGGCAAAGATATGGGTTTCAGTGCCCCAGGTGGTATAACAGGAGCACCAGCACTGCTTGTCCTTGCTGATTCATTGCAGCATTCCTCAACTGCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	328522	330075	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function

GO:0004857 enzyme inhibitor activity

GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006997.1	PF01095.14	Pectinesterase	235	332	3.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.104
SRR1783600	control	0.084
SRR1783602	moderate drought stress	0.018
SRR1811619	moderate drought stress	0.036

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.790
DRR006520	Root Summer glycyrrhizin high producing strain	0.839
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.631

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.038
SRR2868004	Drought Stress (root)	0.045
SRR2967015	Control (root)	0.024

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.122
SRR9715740	Leaf	0.342
SRR9715741	Leaf	0.062
SRR9715739	Root	0.023
SRR9715742	Root	0.052
SRR9715743	Root	0.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.034
SRR8749028	MeJA induced 9h	0.063
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.084
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.026

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.159
SRR8400027	Control - Root	0.231