Gene detail information of Glyur000083s00006993 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09460.1 | 8.00E-34 | Carbohydrate-binding X8 domain superfamily protein |
| NR | KHN14216.1 | 2.50E-174 | Glucan endo-1,3-beta-glucosidase 1 [Glycine soja] |
| Swissprot | tr|O65399|E131_ARATH | 2.00E-27 | Glucan endo-1,3-beta-glucosidase 1 (Precursor) |
| trEMBL | tr|K7KGI9|K7KGI9_SOYBN | 2.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38770.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 303095 | 307900 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006993.1 | PF07983.8 | X8 | 418 | 488 | 1.10E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.228 |
| SRR1783600 | control | 14.364 |
| SRR1783602 | moderate drought stress | 8.671 |
| SRR1811619 | moderate drought stress | 8.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.585 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.859 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.817 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.825 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.704 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.319 |
| SRR2868004 | Drought Stress (root) | 11.732 |
| SRR2967015 | Control (root) | 11.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.900 |
| SRR9715740 | Leaf | 4.312 |
| SRR9715741 | Leaf | 1.961 |
| SRR9715739 | Root | 1.557 |
| SRR9715742 | Root | 7.800 |
| SRR9715743 | Root | 5.661 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.256 |
| SRR8749028 | MeJA induced 9h | 2.190 |
| SRR8749029 | MeJA induced 9h | 2.209 |
| SRR8749030 | Uninduced | 0.823 |
| SRR8749031 | Uninduced | 0.786 |
| SRR8749032 | Uninduced | 0.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.643 |
| SRR8400027 | Control - Root | 8.151 |