Gene detail information of Glyur000083s00006985 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01850.2 | 0 | S-adenosylmethionine synthetase 2 |
| NR | XP_007163296.1 | 0 | hypothetical protein PHAVU_001G222800g [Phaseolus vulgaris] |
| COG | YP_008801702.1 | 2.00E-159 | S-adenosylmethionine synthetase [Exiguobacterium sp. MH3] |
| Swissprot | tr|Q307Y9|METK1_SOLTU | 0 | S-adenosylmethionine synthase 1 |
| trEMBL | tr|V7D197|V7D197_PHAVU | 0 | S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 266527 | 269130 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00789 | metK | EC:2.5.1.6 | Biosynthesis of amino acids | map01230 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006985.1 | PF00438.15 | S-AdoMet_synt_N | 25 | 123 | 3.60E-41 |
| Glyur000083s00006985.1 | PF02772.11 | S-AdoMet_synt_M | 138 | 260 | 2.30E-49 |
| Glyur000083s00006985.1 | PF02773.11 | S-AdoMet_synt_C | 262 | 403 | 2.50E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 341.151 |
| SRR1783600 | control | 343.558 |
| SRR1783602 | moderate drought stress | 798.628 |
| SRR1811619 | moderate drought stress | 797.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 420.438 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 415.886 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 138.424 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 134.969 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 546.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 552.411 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.682 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 99.555 |
| SRR2868004 | Drought Stress (root) | 126.829 |
| SRR2967015 | Control (root) | 114.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 100.910 |
| SRR9715740 | Leaf | 149.959 |
| SRR9715741 | Leaf | 178.479 |
| SRR9715739 | Root | 681.916 |
| SRR9715742 | Root | 414.562 |
| SRR9715743 | Root | 444.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.230 |
| SRR8749028 | MeJA induced 9h | 79.607 |
| SRR8749029 | MeJA induced 9h | 53.402 |
| SRR8749030 | Uninduced | 64.105 |
| SRR8749031 | Uninduced | 32.572 |
| SRR8749032 | Uninduced | 54.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 238.205 |
| SRR8400027 | Control - Root | 191.515 |