Gene detail

Gene detail information of Glyur000083s00006977.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26751.1	0	shaggy-related kinase 11
NR	CDP15204.1	0	unnamed protein product [Coffea canephora]
COG	YP_003265973.1	1.00E-11	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|P43288\|KSG1_ARATH	0	Shaggy-related protein kinase alpha
trEMBL	tr\|A0A068V400\|A0A068V400_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_96 {ECO:0000313\|EMBL:CDP15204.1}

Sequence

Transcript Sequence

>Glyur000083s00006977.1
CAAAGTCAGTTTGAACGGTCGAAAAAACGGGTGCAACGCTGTTCTTAGCGTTTTTCCCAATTTTTTGTAGCTGAAATGTATATATTTTTTTCTTAAAATTAAAAAAATAATAAAATATACTACAAGTAAATTAAACAGTGTTCTTCTTTGACTGTAACGGTGTCACCAACGCATTCTGAAAAAGCAGAAACACTGTTTGCTCACACAATTCCATAAAGAAGAATCCACCTTCTCACTCACTCACTCACTCACACATGGATCTAACTCCATTGAGTGTATGAAACAAACACCGCACAATCCCACAAAGCAGAAACACANTTGAACTCATGAATGAAATATTATAAGATAGATAGCAAGGAAGGCAGTGAAATTTTGTGGAAGATGGCTTCGCTTGGCGTGGCACCAACATCGGGCTTGAGAGAATCCAGTGGTGTTGATAGATTGCCAGAGGAGATGAATGACATGAAAATTAGGGATGATAAAGAAATGGAAGCTACGGTTGTTGATGGCAATGGAACAGAGACAGGACATATCATTGTAACTACCATTGGGGGTGGAAATGGTCAGCCGAAGCAGACTATAAGCTATATGGCAGAGAGGATTGTCGGGCATGGATCATTTGGGGTTGTTTTCCAGGCTAAATGCTTGGAGACTGGTGAAACTGTGGCTATCAAAAAGGTTCTTCAAGACAAGAGGTATAAGAACCGGGAGCTGCAAACAATGCGTCTTCTTGACCACCCAAACGTTGTCTCTTTGAAGCATTGTTTCTNTTCAACCACTGAAAAGGATGAACTATACCTTAATTTGGTACTTGAGTATGTTCCTGAAACTATTCATCGCGTGATCAAACTTCACAACAAGTCGAACCAACGCTTGCCACNGATATATGTGAAACTGTATGCATACCAGATCTTTAGGGCGCTATCTTATATTCAGTGTTCTGTTGGAGTCTGCCATCGAGACATCAAGCCTCAAAATTTAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACAGCTATTGACATCTGGTCTGCAGGTTGTGTATTGGCTGAGCTTCTGCTTGGACAGCCTTTGTTCCCTGGTGAAAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTCTGGGCACTCCAACAAGGGAAGAAATTAAGTGCATGAACCCTAACTATACAGAATTTAAATTCCCACATATTAAAGCACATCCATGGCACAAGATCTTTCATAAGCGCATGCCACCAGAAGCTGTTGATTTGGTATCTAGACTACTACAATACTCCCCCAACCTGCGGTGCACAGCTTTAGATGCCTTGACCCATCCCTTCTTTGATGAACTTCGTGACCCAAACACTCGCTTGCCAAATGGTCGTTTTCTACCACCACTATTCAATTTCAAACCCCATGAACTGAAGGGAGTCTCAATTGAGGGGTTACTGAAATTGATTCCAGAGCATGCGAGGAAGCAATGCCCGTTTCTTGGCTTGTGATATTGTGAAATATAAGAAAACTGCTAGTGTCGTTTCCATGTGAATGCTGTGTTTCCTCTATTTATGAAATGAGATTTGTACCATTATGTATCCTTGTATTATGGTGCCTTGTAAAAAACAGATTTAGAGATTTATGGAACTCAATATTACCCAACCCTCGATGGGTATTTAGGAGAAAACTGTGTTTCCTGTATCACAGCATATTGTAACATCGAATAGAAGACAGTTGTCATATGTTCAATCGNTAATGGTATTTGTTTCTCCATTTGCCTAATTTAGTTGTGCTTAGCATGGTCACAGGTGATGTCAATTTTGCATGTCTCGCAATTGTGTAACATGGGACAAAATCNAGCTGCTCATCTGGAGTAGATTGCTGTTTACAAATTACAAGNCTGTCTAAACTTGTGATTTTTTATTATATTGTGTGACCTTCACTGTATTTTTTTTGTACTCAACGAGGTGGGAGTATTATACAAGGAACATGACTTCTTCAGAGGATGAGAGGTGCTTGAAGCAAAAGCATTAGCCCGAANACAACAGGTAAAGAAACGGCAACTATTGCTGAAGTATCTTCTCACTTGATCGCGGGGACTTCAATCTTTGTTCTGTGAAGACTTAAGTATGTACTTTTGAGAAGAATCATTTACAAAGATCACTTGATCTGTAATATTTTGTTCTTCCAAAACTTTTTTTTTTGTCTTTTTAACTATTTATTTCATTGTCTTACAATTTATGCTATAAAAATCAGGCCTCAAAATTTAGAACTTAATCTGAATGCCCAAGGACTCGATTTTGTATTCGGCTAACAACTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	226399	231994	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006977.1	PF00069.20	Pkinase	88	217	5.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	64.137
SRR1783600	control	64.601
SRR1783602	moderate drought stress	60.516
SRR1811619	moderate drought stress	60.045

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.644
DRR006520	Root Summer glycyrrhizin high producing strain	66.249
DRR006521	Root Winter glycyrrhizin high producing strain	32.032
DRR006522	Root Winter glycyrrhizin high producing strain	31.799
DRR006523	Root Summer glycyrrhizin low producing strain	58.054
DRR006524	Root Summer glycyrrhizin low producing strain	58.422
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.939
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.918

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	56.555
SRR2868004	Drought Stress (root)	51.845
SRR2967015	Control (root)	48.963

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.303
SRR9715740	Leaf	25.103
SRR9715741	Leaf	27.020
SRR9715739	Root	12.507
SRR9715742	Root	37.007
SRR9715743	Root	35.804

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	50.978
SRR8749028	MeJA induced 9h	39.201
SRR8749029	MeJA induced 9h	28.462
SRR8749030	Uninduced	39.150
SRR8749031	Uninduced	23.581
SRR8749032	Uninduced	18.691

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.011
SRR8400027	Control - Root	58.924