Gene detail

Gene detail information of Glyur000083s00006972

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09390.1	5.00E-129	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	XP_004494523.1	0	PREDICTED: GDSL esterase/lipase At1g09390-like [Cicer arietinum]
COG	YP_007091764.1	9.00E-06	G-D-S-L family lipolytic protein [Chroococcidiopsis thermalis PCC 7203]
Swissprot	tr\|O80522\|GDL2_ARATH	8.00E-161	GDSL esterase/lipase At1g09390 (Precursor)
trEMBL	tr\|I1NBP7\|I1NBP7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G41470.1}

Sequence

Transcript Sequence

>Glyur000083s00006972.1
TGGTGGAGTGAAGTAGACTGTACAAGTACGACTACAAAGGGTAGATAGATTATTGTTTTGTTGGCAAGCCTCAACTCTCATCAACCGACAACACACACACACACAGAAGTATCATTCAGTATGAGAACTATGGGTTGTGGCGGTGAGTCTCCGAGTGTAGCATCCTCACTACTGTTGATACTGTTTCTATGGATGTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTATGGCTGTGGCTGTGAGTACTACTAGTGTGGGTGGATGCGGTAGGCCTGGGAGAGGGATCCTATTCGTGTTCGGCGATTCCAACTCGGACACGGGTGGACTCGCCTCCGGACTCGGTTTCCCCATCAATCCTCCCAATGGCCGCTCTTTCTTTCACAGATCCACTGGTCGCTTGTCCGACGGACGCCTCGTCATCGACCTCCTCTGCCAAAGTTTGAATGTAAGCATTTTGACTCCATACTTGGACTCCTTGTCTGGATCCTCATTCACAAATGGAGCAAACTTTGCAGTGGTGGGGTCCTCTACCCTCCCAAAATATCTTCCTTTCTCTTTAAATATACAGGTCATGCAGTTCCTGCATTTCAAAGGTCGCAGCCTTGAACTTGTTANCGCAGGTGCAAGAAATTTGATCAATGACGAAGGCTTCCGAGATGCACTCTACTTGATTGATATTGGGCAAAATGACCTTGCTGATTCATTTGCCAAAAATCTATCANATGCGCAGGTCGTCAAGAAGATCCCAGCAGTTATCACTGAANTTGAAAATGCTGTCAAGATTATAGATAAGAAATGTGTAGCTACTCCTGAATTGTCCTCCCAAAATAAAAATCAGGATAAAGAATTATCAAGTATGATGCTTGGTTCATCTNTCTGTATGCAGAGTTTGTATAATGGAGGTGCCAGGAAATTTTGGGTTCACAATACCGGGCCCTTGGGCTGTCTTCCTAAAATACTTGCACTGGCTCAGAAGAAGGATCTGGATTCATTTGGATGTCTTTCTAGTTACAACACTGCTGCAAGATTGTTTAATGAAGCGCTGTATCACTTGACTCAGAAACTAAGAACTGAATTGAAGGATGCTACCTTAGTCTATGTCGATATTTATGCCATTAAGCATGACCTCATCACAAATGCCACCAAATATGGTTTCTCAAATCCGTTGATGGTATGCTGTGGCTATGGAGGGCCTCCTTACAATTTTGACGTAAGGGTGACATGTGGTCAACCTGGTTATCAGGTTTGTGCTGAAGGATCTCGGTATGTGAGTTGGGATGGAATCCATCACACTGAGGCTGCAAATACATTTATAGCTTCTAGGATACTTTCCATGGCTTATTCCACACCACGGGTACCTTTTGGTTTCTTCTGCAGCCACTGATGGTGATTGATTATTATGCATGCAAAACAGTGAACAACTTCATTAGTTGCTGTCTTACCTTGTCCAAGAACAGGGTTTGTCATTTAGTCACGCTCACGCTGAAGCTGTAAGAAATTAGGGGACATGCAATTGAGCTGTAAGACTAGTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	201888	206701	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006972.1	PF00657.17	Lipase_GDSL	58	404	2.90E-36
Glyur000083s00006972.2	PF00657.17	Lipase_GDSL	58	369	1.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.742
SRR1783600	control	5.754
SRR1783602	moderate drought stress	5.722
SRR1811619	moderate drought stress	5.745

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.775
DRR006520	Root Summer glycyrrhizin high producing strain	8.248
DRR006521	Root Winter glycyrrhizin high producing strain	2.120
DRR006522	Root Winter glycyrrhizin high producing strain	2.046
DRR006523	Root Summer glycyrrhizin low producing strain	13.792
DRR006524	Root Summer glycyrrhizin low producing strain	13.599
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.453
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.615

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.052
SRR2868004	Drought Stress (root)	9.052
SRR2967015	Control (root)	13.840

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.801
SRR9715740	Leaf	2.643
SRR9715741	Leaf	4.000
SRR9715739	Root	9.736
SRR9715742	Root	6.684
SRR9715743	Root	4.718

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.430
SRR8749028	MeJA induced 9h	4.331
SRR8749029	MeJA induced 9h	6.037
SRR8749030	Uninduced	1.384
SRR8749031	Uninduced	0.124
SRR8749032	Uninduced	0.178

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.538
SRR8400027	Control - Root	15.804