Gene detail

Gene detail information of Glyur000083s00006968

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G09340.1	0	chloroplast RNA binding
NR	KHN03920.1	0	Hypothetical protein glysoja_022606 [Glycine soja]
COG	YP_007122055.1	1.00E-119	nucleoside-diphosphate-sugar epimerase [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q9SA52\|CP41B_ARATH	0	Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic (Precursor)
trEMBL	tr\|I1JR38\|I1JR38_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G38930.1}

Sequence

Transcript Sequence

>Glyur000083s00006968.1
GTTTTGTTTGTGTCTTGTTCTTATTTTAGCTTTGGAATCTCAAGCATGAAATTTTCTCACATAATATAGGTGGTGCAAATTANTGTTATCTTATAAATGGATTTTTATATTCTAAAAAAAAGAAAGAAATGTTAAAGGGGGANGGAAATGAGAGGCTGTGGATGCAAAAGAAGTGGAGGTGGATCATTGTCTTATCATCACAACAGCAAGAAGAGGTGTGTGTAGTTAGTTGGGTCAGGGAAGGAAAACACACTTCAAATTTTGAGCCCCCCCATGCTTAGTGGACTACACACCTCACAAACAAGCATGGCAAGAATGGTGGCACTCCAACAGAACCAACTCTCTTTCTCTCCCTTAGCTTCCTCTCTTTCTGATTTCAGCGGAACCAGACTTCATACTCAAATTCAGTTGAAAAGAAAAGCATGGCAGCCAAAAGGGTCTTTTTATGTCTCAGCATCAAGCACCAAGAAAATCCTCATAATGGGAGGCACTAGGTTTATTGGTGTGTTTTTGTCTAGGCTCCTTGTCAAAGAAGGTCACCAGGTGACTCTATTTACAAGAGGAAAAGCTCCTGTCACTCAACAATTGCCAGGTGAATCAGAGAGTGATTATGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGAATTTGTAAAATCCAGTCTCTCAGCACAAGGGTTTGATGTTGTTTACGACATAAATGGACGAGAGGCAGAAGAAGTTGAGCCCATACTGGAAGCTCTGCCTAATCTGGAACAGTTCATTTACTGCTCTTCTGCTGGTGTCTATCTCAAATCTGATTTGTTACCTCACGCTGAGACTGATGCAGTTGATCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAGAGCTTGCTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTCTACATCTATGGACCCTTGAACTACAACCCTGTTGAAGAGTGGTTCTTCCACAGATTGAAAGCCGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGTCATGTTAAGGATTTGGCAAGAGCTTTTGTTGAGGTTCTTGGTAATGATAAGGCCAGCAAGCAAATATTCAACATCTCAGGAGATAAGTATGTAACGTTTGATGGATTAGCAAGAGCATGTGCCAAGGCTGGTGGGTTCCCGGAGCCAGAGATCATTCACTACAACCCTAAAGACTTTGATTTTGGGAAAAAGAAGTCGTTTCCATTCCGTGACCAGCATTTCTTTGCATCAGTTGAGAAGGCAAAGAGCGTTCTTGGGTTGGAACCTGAATTTGGCCTTGTAGAAGGTCTTGCAGACTCCTACAACCTGGACTTTGGTAGAGGAACTTATCGGAAAGAGGCTGATTTTTCAACAGATGACATAATTCTTGGCAAGAGTCTTGTTAGTGTATGAATGTGATCACTCTTCTTTCAATTTTCAGTATTTCAAATGTAATTAAAAAAAAAACTGTTCGGGTTTTCTACAATGTCATCAGATAAAGTTGTGGAATATTTCTGTGCTTTTCATTCAGTATTTTTTCTTAAAAATGAAAAATAATGGTTTTGTCTAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	179742	183195	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006968.1	PF01370.16	Epimerase	67	284	7.70E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.449
SRR1783600	control	1.537
SRR1783602	moderate drought stress	1.191
SRR1811619	moderate drought stress	1.203

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.992
DRR006520	Root Summer glycyrrhizin high producing strain	4.027
DRR006521	Root Winter glycyrrhizin high producing strain	5.350
DRR006522	Root Winter glycyrrhizin high producing strain	5.214
DRR006523	Root Summer glycyrrhizin low producing strain	0.408
DRR006524	Root Summer glycyrrhizin low producing strain	0.479
DRR006525	Leaf Summer glycyrrhizin high producing strain	577.986
DRR006526	Leaf Summer glycyrrhizin high producing strain	575.539

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.151
SRR2868004	Drought Stress (root)	4.974
SRR2967015	Control (root)	0.685

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	618.509
SRR9715740	Leaf	803.108
SRR9715741	Leaf	543.330
SRR9715739	Root	2.461
SRR9715742	Root	2.345
SRR9715743	Root	2.403

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.418
SRR8749028	MeJA induced 9h	0.084
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.714
SRR8400027	Control - Root	7.867