Gene detail information of Glyur000083s00006966 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15510.1 | 3.00E-83 | Photosystem II reaction center PsbP family protein |
| NR | XP_003521659.1 | 7.76E-152 | PREDICTED: psbP domain-containing protein 1, chloroplastic-like [Glycine max] |
| Swissprot | tr|O23403|PPD1_ARATH | 4.00E-108 | PsbP domain-containing protein 1, chloroplastic (Precursor) |
| trEMBL | tr|I1JR41|I1JR41_SOYBN | 3.00E-152 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38960.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 173648 | 175261 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006966.1 | PF01789.11 | PsbP | 72 | 258 | 2.50E-51 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.236 |
| SRR1783600 | control | 2.278 |
| SRR1783602 | moderate drought stress | 1.259 |
| SRR1811619 | moderate drought stress | 1.278 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.250 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.353 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.615 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.562 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.850 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.909 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.797 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.651 |
| SRR2868004 | Drought Stress (root) | 3.694 |
| SRR2967015 | Control (root) | 3.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.350 |
| SRR9715740 | Leaf | 6.925 |
| SRR9715741 | Leaf | 5.789 |
| SRR9715739 | Root | 0.583 |
| SRR9715742 | Root | 2.006 |
| SRR9715743 | Root | 0.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.972 |
| SRR8749028 | MeJA induced 9h | 2.139 |
| SRR8749029 | MeJA induced 9h | 1.243 |
| SRR8749030 | Uninduced | 1.079 |
| SRR8749031 | Uninduced | 0.319 |
| SRR8749032 | Uninduced | 0.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.417 |
| SRR8400027 | Control - Root | 6.520 |