Gene detail information of Glyur000083s00006959 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G56500.1 | 0 | haloacid dehalogenase-like hydrolase family protein |
| NR | XP_006604788.1 | 0 | PREDICTED: NHL repeat-containing protein 2-like [Glycine max] |
| COG | YP_007119844.1 | 3.00E-138 | thiol-disulfide isomerase-like thioredoxin [Microcoleus sp. PCC 7113] |
| Swissprot | tr|Q84MD8|FHYRK_ARATH | 6.00E-15 | Riboflavin kinase |
| trEMBL | tr|I1NBR0|I1NBR0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G41590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 134884 | 150894 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006959.1 | PF13419.1 | HAD_2 | 82 | 265 | 1.20E-25 |
| Glyur000083s00006959.1 | PF13905.1 | Thioredoxin_8 | 404 | 498 | 1.20E-12 |
| Glyur000083s00006959.1 | PF01436.16 | NHL | 607 | 632 | 1.90E-06 |
| Glyur000083s00006959.1 | PF01436.16 | NHL | 787 | 814 | 6.50E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.705 |
| SRR1783600 | control | 2.718 |
| SRR1783602 | moderate drought stress | 5.649 |
| SRR1811619 | moderate drought stress | 5.636 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.545 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.639 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.738 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.717 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.080 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.123 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.989 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 19.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.167 |
| SRR2868004 | Drought Stress (root) | 8.861 |
| SRR2967015 | Control (root) | 9.910 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.119 |
| SRR9715740 | Leaf | 34.900 |
| SRR9715741 | Leaf | 32.731 |
| SRR9715739 | Root | 1.315 |
| SRR9715742 | Root | 3.588 |
| SRR9715743 | Root | 3.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.724 |
| SRR8749028 | MeJA induced 9h | 6.570 |
| SRR8749029 | MeJA induced 9h | 3.201 |
| SRR8749030 | Uninduced | 3.559 |
| SRR8749031 | Uninduced | 2.538 |
| SRR8749032 | Uninduced | 3.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.323 |
| SRR8400027 | Control - Root | 6.953 |