Gene detail

Gene detail information of Glyur000083s00006957

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04950.1	4.00E-111	nicotianamine synthase 1
NR	XP_003521662.1	0	PREDICTED: nicotianamine synthase-like [Glycine max]
COG	YP_004866103.1	8.00E-10	nicotianamine synthase family protein [Micavibrio aeruginosavorus ARL-13]
Swissprot	tr\|Q9XGI7\|NAS_SOLLC	2.00E-145	Nicotianamine synthase
trEMBL	tr\|I1JR50\|I1JR50_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G39050.1}

Sequence

Transcript Sequence

>Glyur000083s00006957.1
ATGGTTTGCCAAGAAGAGTTGTTGGTGGAGAGAGTGTGCGGGCTGTATGAACAAATCTCAAGCCTCGACTCACTCAAACCCTGTAAGAATGTCGACACNCTTTTCACCGAGCTTGTCCTCACATGCATGCCACCTAGCCCCATAGATGTCACCAACCTCCCCAATACCGTTCAAGACATCAGATCCCACCTTATAAGGCTCTGTGGCGAAGCCGAAGGCTATTTGGAAAGCCACTACTCAACCATCCTAGGNNCCTACGAAAACCCACTCGACCACCTCCACATCTTCCCCTATTACTCCAACTACCTCAAACTTGGTCTCCTTGAATTCTCCATCCTTAGCCAACACTGCACCCATGTCCCTACCAAAATTGCCTTCGTGGGTTCAGGACCCCTTCCTTTTACTTCAATTGTGTTGGCCTCAAATCACTTACCTTCCACTATTTTCCACAACTATGACATCGACCCTGTAGCCAATTCCAGTGCCCTGCGTTTGGTTTCCTCTGACCCTGATTTATCAAAGCGCATGGTTTTCCACACAAGTGACATATTAAATGTGTCTAGCGAATTGAAGGACTACGAGGTTGTTTACTTGGCGGCACTTGTGGGGATGGATAAGGAAGAGAAGAATCGAGTGATNGATCACTTGGCCAAACACATGGCCCCTGGAGCACTTCTTATGCTGAGGAGTGCTCATGGGGCTCGTGCTTTTCTTTACCCTGTGGTTGAGCCCTGTGATCTTCGTGGCTTTGAGGTTCTCTCTGTGTTCCACCCCACCGATGAGGTTATTAATTCGGTTGTCATAGCACGTAAGTATCCTATGCCTATGCCTATGCCTATGCCAATACACTCATCACTTGATCAGCAAGGTCTTGTTGGTTCCATGATCCTACCGAATAAGTGTTCTGAGATTCAAGTCTTCAACCCCCTGATCAACCATGGGAATATGATTGAGGAATTGACCATTGAGGAGCAACTCTCGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	115592	116575	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030418 nicotianamine biosynthetic process

molecular_function
GO:0030410 nicotianamine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006957.1	PF03059.11	NAS	4	273	5.10E-127

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.000
SRR1783600	control	24.763
SRR1783602	moderate drought stress	45.862
SRR1811619	moderate drought stress	45.392

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.500
DRR006520	Root Summer glycyrrhizin high producing strain	54.542
DRR006521	Root Winter glycyrrhizin high producing strain	0.688
DRR006522	Root Winter glycyrrhizin high producing strain	0.885
DRR006523	Root Summer glycyrrhizin low producing strain	24.664
DRR006524	Root Summer glycyrrhizin low producing strain	24.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	164.700
DRR006526	Leaf Summer glycyrrhizin high producing strain	161.812

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	179.034
SRR2868004	Drought Stress (root)	95.724
SRR2967015	Control (root)	44.579

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	51.532
SRR9715740	Leaf	126.809
SRR9715741	Leaf	75.054
SRR9715739	Root	61.801
SRR9715742	Root	70.962
SRR9715743	Root	68.156

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.731
SRR8749028	MeJA induced 9h	12.250
SRR8749029	MeJA induced 9h	6.765
SRR8749030	Uninduced	13.761
SRR8749031	Uninduced	7.677
SRR8749032	Uninduced	3.170

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.025
SRR8400027	Control - Root	14.875