Gene detail information of Glyur000083s00006949 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G26910.1 | 3.00E-90 | |
| NR | XP_004494537.1 | 0 | PREDICTED: serine-rich adhesin for platelets-like [Cicer arietinum] |
| trEMBL | tr|A0A072UFB2|A0A072UFB2_MEDTR | 0 | DUF4378 domain protein {ECO:0000313|EMBL:KEH24480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 76120 | 80349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006949.1 | PF14383.1 | VARLMGL | 82 | 108 | 8.10E-12 |
| Glyur000083s00006949.1 | PF14309.1 | DUF4378 | 758 | 912 | 4.80E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.871 |
| SRR1783600 | control | 3.901 |
| SRR1783602 | moderate drought stress | 4.091 |
| SRR1811619 | moderate drought stress | 4.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.433 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.757 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.611 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.511 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.523 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.399 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.207 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.708 |
| SRR2868004 | Drought Stress (root) | 9.401 |
| SRR2967015 | Control (root) | 10.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.634 |
| SRR9715740 | Leaf | 7.185 |
| SRR9715741 | Leaf | 7.538 |
| SRR9715739 | Root | 0.361 |
| SRR9715742 | Root | 3.198 |
| SRR9715743 | Root | 2.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.682 |
| SRR8749028 | MeJA induced 9h | 7.848 |
| SRR8749029 | MeJA induced 9h | 3.986 |
| SRR8749030 | Uninduced | 1.116 |
| SRR8749031 | Uninduced | 0.885 |
| SRR8749032 | Uninduced | 1.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.642 |
| SRR8400027 | Control - Root | 9.227 |