Gene detail information of Glyur000083s00006942.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06740.1 | 6.00E-20 | GATA transcription factor 15 |
| NR | XP_004494549.1 | 2.14E-52 | PREDICTED: GATA transcription factor 16-like [Cicer arietinum] |
| Swissprot | tr|Q8LG10|GAT15_ARATH | 6.00E-31 | GATA transcription factor 15 |
| trEMBL | tr|F6I4R1|F6I4R1_VITVI | 3.00E-52 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB61898.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 39051 | 40300 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006942.1 | PF00320.22 | GATA | 20 | 53 | 2.30E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.739 |
| SRR1783600 | control | 0.775 |
| SRR1783602 | moderate drought stress | 0.620 |
| SRR1811619 | moderate drought stress | 0.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.763 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.756 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.259 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.254 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.234 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.287 |
| SRR2868004 | Drought Stress (root) | 7.224 |
| SRR2967015 | Control (root) | 4.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.335 |
| SRR9715740 | Leaf | 8.979 |
| SRR9715741 | Leaf | 5.065 |
| SRR9715739 | Root | 0.377 |
| SRR9715742 | Root | 0.941 |
| SRR9715743 | Root | 1.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.770 |
| SRR8749028 | MeJA induced 9h | 3.263 |
| SRR8749029 | MeJA induced 9h | 0.853 |
| SRR8749030 | Uninduced | 0.036 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.732 |
| SRR8400027 | Control - Root | 2.511 |