Gene detail

Gene detail information of Glyur000083s00006941

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G26940.4	2.00E-68	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	XP_003626171.1	0	DNA polymerase III polC-type [Medicago truncatula]
COG	YP_003708989.1	3.00E-18	DNA polymerase III, epsilon chain [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q682U6\|DPD1_ARATH	1.00E-90	Exonuclease DPD1, chloroplastic/mitochondrial {ECO:0000303\|PubMed:21521697} (Precursor)
trEMBL	tr\|G7KWH7\|G7KWH7_MEDTR	0	DNA polymerase III, epsilon subunit-like protein {ECO:0000313\|EMBL:AES82389.1}

Sequence

Transcript Sequence

>Glyur000083s00006941.1
AGTTTTTCTTTCTTTCTTTCTTTTGTATCACATTTTTCTGTTTCATCTACATTTCAGGTTGTAGCTGATTGCACATTTGATGAGGAATTCTTGATAAAATAATTTTCTTAGCTATTGTTATTGAATTCAGATGAAGACAGGCTCCATGATTTTTTCCTTATTGCAAGTACCTAGATGCAGAATACACAGCTTAGCTAATAATTGGGGTGAAACCTTCCACAGCTTCAGTAACACTAGTGGAAGCAGTTCTAGAGTAAGGCTGCTTGGTTCTAAAATTTATGGGCTTCAGGGAGGGCACAGAAAGAAGTGGACTCGAAGACCTATAACTACAAATACAGAAGACAATGGAAGCACCAAATCAAGAAGTACCAAGCAGGAAATTTTGAGTGAAACAATTTCAACTAGTTCTACAGTAAATGTAAATAAAACACAGCTAGGTCAATTCCAGGAAGTTCAGTACTGTGACACACAACAGGAGATTTCTCAGAATAAAGACTTGTCTAGCTTAGTCACTGTTATTGTTTTTGATATTGAGACCACCGGGTTAAGCAGAGAGAATGAACGGATCATTGAGATTGCACTTCGAGACCTTCAGGGTGGTCCGAATAGCACTTTCCAGACTTTTGTAAATCCTCAACGCTTTGTTTCTAATTCAAATATTCACGGCATTACTACTCAGATGGTGAACAAACCTGATGTTCCAAGGATGGAGGACCTGGTTCCCATCTTATTGCACTACGTTCGAAGCCGCGAGAAACCTGGGGGATATGTGTTACTGGTTGCCCATAATGCTCGCTGTTTTGATGTACCCTTCATCATCAATGAGTTACGGCGTTGTTCTACAAAGATTCCTCCTAATTGGCTGTTTGTGGATACCCTTCCTTTAGCACGTGAATTAATGAAGTCTGGAGGAACAAAACTTTCTTCAACATCCCTCGCTGCACTTCGTGAGTTCTACGGAATTAAAGTGGATGGAACAGCACACAGGGCCATGGTAGATGTGAACACATTGTCTTTGGTTCTTCCCAGGTTGACCTTTGATCTGAAATTGACCCTATCGGGGCTTGTCCAAAAATCGTTCAGAGAATCAGATATTAACTCTAAGAAGAAGAAGAATTCAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	33619	35786	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003676 nucleic acid binding

GO:0004527 exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006941.1	PF00929.19	RNase_T	130	294	5.00E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.345
SRR1783600	control	1.538
SRR1783602	moderate drought stress	1.342
SRR1811619	moderate drought stress	1.402

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.144
DRR006520	Root Summer glycyrrhizin high producing strain	4.296
DRR006521	Root Winter glycyrrhizin high producing strain	10.154
DRR006522	Root Winter glycyrrhizin high producing strain	9.932
DRR006523	Root Summer glycyrrhizin low producing strain	6.242
DRR006524	Root Summer glycyrrhizin low producing strain	6.300
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.061
SRR2868004	Drought Stress (root)	11.038
SRR2967015	Control (root)	8.960

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	14.998
SRR9715740	Leaf	18.078
SRR9715741	Leaf	10.938
SRR9715739	Root	0.381
SRR9715742	Root	2.535
SRR9715743	Root	2.624

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.951
SRR8749028	MeJA induced 9h	28.944
SRR8749029	MeJA induced 9h	47.755
SRR8749030	Uninduced	23.319
SRR8749031	Uninduced	35.066
SRR8749032	Uninduced	27.169

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.487
SRR8400027	Control - Root	10.064