Gene detail information of Glyur000083s00006940 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05700.1 | 1.00E-58 | Drought-responsive family protein |
| NR | XP_003536052.1 | 4.47E-110 | PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 isoform 1 [Glycine max] |
| Swissprot | tr|Q84J70|DI193_ARATH | 2.00E-72 | Protein DEHYDRATION-INDUCED 19 homolog 3 |
| trEMBL | tr|I1LB68|I1LB68_SOYBN | 2.00E-110 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G29030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00083 | 26139 | 30369 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000083s00006940.1 | PF05605.7 | zf-Di19 | 43 | 88 | 1.70E-17 |
| Glyur000083s00006940.1 | PF14571.1 | Di19_C | 100 | 203 | 1.00E-33 |
| Glyur000083s00006940.2 | PF05605.7 | zf-Di19 | 43 | 73 | 6.10E-10 |
| Glyur000083s00006940.2 | PF14571.1 | Di19_C | 87 | 190 | 8.40E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 129.108 |
| SRR1783600 | control | 133.350 |
| SRR1783602 | moderate drought stress | 246.763 |
| SRR1811619 | moderate drought stress | 245.876 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 151.426 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 146.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 65.581 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 64.359 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 135.960 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 132.702 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.874 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.657 |
| SRR2868004 | Drought Stress (root) | 108.451 |
| SRR2967015 | Control (root) | 99.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.432 |
| SRR9715740 | Leaf | 68.931 |
| SRR9715741 | Leaf | 74.996 |
| SRR9715739 | Root | 53.673 |
| SRR9715742 | Root | 84.692 |
| SRR9715743 | Root | 82.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 105.903 |
| SRR8749028 | MeJA induced 9h | 85.358 |
| SRR8749029 | MeJA induced 9h | 88.625 |
| SRR8749030 | Uninduced | 78.259 |
| SRR8749031 | Uninduced | 44.771 |
| SRR8749032 | Uninduced | 105.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 67.154 |
| SRR8400027 | Control - Root | 80.561 |