Gene detail

Gene detail information of Glyur000083s00006936

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47500.1	1.00E-85	P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain
NR	XP_004494558.1	0	PREDICTED: kinesin-4-like [Cicer arietinum]
Swissprot	tr\|O81635\|ATK4_ARATH	0	Kinesin-4
trEMBL	tr\|G7KWI8\|G7KWI8_MEDTR	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}

Sequence

Transcript Sequence

>Glyur000083s00006936.1
ATGACAAGCGAGCAAGTTTTGCCATTCTCTGTTGTTTCTGTGGTAGAAGATGTTCTTCAACAACATGGTGTCCGGTCGTGTGATGTCAACTTGGCGTCAAGGAAAGCTGAAGAAGCTTCTTTGAGAAGGTATGAAGCGGCTGGTTGGCTGAGAAAGATGGTTGGAGTTGTTGGAGGGAAAGATTTGCCAGCTGAGCCATCTGAAGAAGACTTCAGGATTGGGTTGCGTAGTGGGATTATCCTCTGCAACGTTCTCAACAAAATTCAACCTGGGGCAGTGCCCAAGGTGGTTGAAGGTCCCAACGATTCTGTTATTATTCCTGATGGGGCAGCATTGTCTGCGTTTCAATACTTTGAAAATGTAAGGAATTTTCTTGTAGCTGTGGAGGAAATGGGGCTTCCTACCTTTGAAGCTTCTGATTTGGAACAGGGAGGAAAATCTTCAAGGATAGTGAATTGTGTATTGGCNCTCAAGTCCTATGCTGAATGGAAACTTGGAGGAGGAAGTGGGTCATGGAAATTTGGTGGGGTTGGAAATCCAAAGCCACCTACCTCTGGGAAACAAATTCTGAGGAAAAACTCAGAACCATTCATGAAGTCTCTATGGAGTATGTCATCAGGTGACAGAGATGGTTACATGAGTGANTCATATAGTGATCCCGGGCACGATCGAAATGAAGGGGGNTCCTTTCCTTCCTTACATTCACTAGTTCGTCAATATTTGTCTGACAAGAAGCCAGAAGAAATTCCCATTGTAGTAGAGTCACTGCTTAACAAAGTCATGGAAGAGTTTGAACGCCGCATGCAAATCCAACAAGAAACCTGTAAAACAACTCAAGAAGATATAGCATCGTCTGAAACAGAACATTCAGTTTCAAAAGCAGCTTCTGTTGATGAAGGGATTGAAGAAAATGAAGAAAAGGAAGAAAGGGAAGAAAAGGAAGATGAGAAGGACTTGGAAGATAAACAAGAGGAATGTAACGATGAGGAATACAAAGAAGATGAAGAATCAAGCAGCCTGAATAATATGAAGCAGCAAAATATAGTCCAGCAACAAAATAGAAACATCCAGGAATTGAAATACATCGTTCATCAAACAAAATCAGGAATGCAGTTTCTGCAAAAGGAATACCANAAGGAGATTTTCAACCTAAGTAAGCACCTGCATAGCCTAGCTTCTGCTGCTTCAGGATATCATAAAGTCCTTGAAGAAAACCGCAAGTTATACAATCAAGTGCAGGATCTGAAAGAGGAAGTTTTCTCAGATACTCAGCCTCTGATTCGTTCTGTTCTTGATGGTTACAATGTTTGTATATTTGCGTATGGCCAGACAGGATCAGGAAAGACATACACTATGTCTGGACCGGATGATCTTAATGAGGAAACCATAGAAATTCGCAACAGTTCCCATAATGGAATCAACGTACCAGATGCCAACCTTGTTCCAGTTTCAACCACTTCCGATGTCATAACTTTGATGAACTTGGGACATAAAAATCGGGCTGTTGGTGCTACTGCCATGAATGATCGTAGCAGTCGTTCTCACAGCTGCCTGACAGTTCATGTTCAAGGAAGGAACCTGACATCGGGAAGCATAATGCGAGGGAGTATGCATCTTGTTGACCTTGCAGGAAGGGGGCAAGCCAAGACCCTCATGTTTGTTCATATTAGTCCGGAGCCTGATGCACTTGGAGAAACACTCAGTACACTGAAGTTTGCCGAACGGGTCTCCACTGTTGAACTTGGTGCTGCAAGAGTTAATAAAGATAATTCATCAGATGTGAAAGAGCTTAAAGAACAGATTGCTAGTCTGAAGGCAGCCTTAGCGAGGAAGGATGGAGAAGCAGAACCACACTTTCCACAATCTAAGAAGGGTGCATCGAAGCTGAAAAGGCGAAGCCTAGATCTCCACGACATGTACAGGAATTCACCACCATGGCCACATGTTGTTGGTGGCAGTAGTCCTGCTCATAGTACTCATGGGGTAACTAATGGAAAAGAGGATGATAAGGAATCAGTTACTGGGGAATGGATTATGGATAAGATTAGGATGAAGAGGAATGACAGCTTAACTAGTGATGATAGCCTAGTGGGGCAATGGGAAGCAGAATGCAAACAGTTCTCTCCATTGCTAAGCCCCAGTTCTCTTTCTGAGCATTCAAGAATGTGCTTGGAACATGGGTATGAGATTGCCACCACAGATGATTCTGATGAGCTTGAACTTGCAACCAGTGATTCTTCTGAATCAGATTTGAACTGGCTACATGCACCTAAACCAATTACCACCCTTTCAAATGGACCAGCAGCCTCTAAAGCAAAGAAATCAACTAATCCCAGACCAGCAAAGAACCCTGCAGAAACCAGGAGTATGATCCCATCATTAATTCCTACTCCATCAAGGAAACAACCCACCCTAGTTACGCAAGCCAGAAAGAAGCCAGGATCTCTTGATGTAAAGAGAAGGAATGGGAATGCAAAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00083	1603	7602	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007018 microtubule-based movement

cellular_component
GO:0005871 kinesin complex

molecular_function

GO:0003777 microtubule motor activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0008017 microtubule binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000083s00006936.1	PF00307.26	CH	47	161	3.30E-10
Glyur000083s00006936.1	PF00225.18	Kinesin	400	455	6.50E-13
Glyur000083s00006936.1	PF00225.18	Kinesin	459	545	7.20E-19
Glyur000083s00006936.1	PF00225.18	Kinesin	546	578	3.00E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.119
SRR1783600	control	3.992
SRR1783602	moderate drought stress	2.856
SRR1811619	moderate drought stress	2.862

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.102
DRR006520	Root Summer glycyrrhizin high producing strain	0.130
DRR006521	Root Winter glycyrrhizin high producing strain	0.044
DRR006522	Root Winter glycyrrhizin high producing strain	0.043
DRR006523	Root Summer glycyrrhizin low producing strain	0.229
DRR006524	Root Summer glycyrrhizin low producing strain	0.199
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.194
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.157

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.936
SRR2868004	Drought Stress (root)	11.136
SRR2967015	Control (root)	7.344

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.729
SRR9715740	Leaf	0.121
SRR9715741	Leaf	0.287
SRR9715739	Root	0.036
SRR9715742	Root	6.934
SRR9715743	Root	6.086

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.078
SRR8749028	MeJA induced 9h	0.176
SRR8749029	MeJA induced 9h	0.123
SRR8749030	Uninduced	0.290
SRR8749031	Uninduced	0.277
SRR8749032	Uninduced	0.072

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.305
SRR8400027	Control - Root	43.927